Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P17
         (906 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       33   0.003
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    33   0.003
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.47 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.9  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    22   5.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   5.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   7.6  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
 Frame = +2

Query: 338 CCPGWTSRPNSLLCIVPL--CRPD-CGSPGAC---IAPNICRCPGGVEAPSCGNGGLYPY 499
           C  GW       LC +    C P+ C + G+C   IA   C C  G +  +C        
Sbjct: 94  CKEGW----EGALCNINTDDCSPNPCRNNGSCVDRIADFECNCKNGWKGKTCS------- 142

Query: 500 PVRTQGGCRRICMNGGTCTN----GTCACAPGWSGGVLHRT 610
            ++        C NGGTC +      C C P W G  L ++
Sbjct: 143 -LKDSHCDHTTCKNGGTCQDLGKTFMCRCPPDWEGTTLSQS 182



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
 Frame = +2

Query: 530 ICMNGGTCTN-----GTCACAPGWSGGVLH 604
           IC   G C N       C C PG++G   H
Sbjct: 37  ICGEHGHCVNLPGVGHRCQCQPGFTGKYCH 66


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
 Frame = +2

Query: 533 CMNGGTCTNG----TCACAPGWSG 592
           CMNGGTC +G     C C PG++G
Sbjct: 32  CMNGGTCIDGINSYICTCKPGFTG 55



 Score = 29.1 bits (62), Expect = 0.050
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
 Frame = +2

Query: 272 LDDRAPSQFVGSHVCRSR-NSTHC-CPGWTSRPNSLLCIVPL--CRPD-CGSPGAC---I 427
           +DD  P+       C    NS  C CP  T      +C + +  CRP  C + G C   +
Sbjct: 223 VDDCKPNPCQNGGTCHDLVNSFSCSCPSGTL---GYICEINVDDCRPGACHNNGTCLDKV 279

Query: 428 APNICRCPGGVEAPSC 475
               C+CP G   P C
Sbjct: 280 GGFECKCPPGFVGPRC 295



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 30/119 (25%), Positives = 41/119 (34%), Gaps = 17/119 (14%)
 Frame = +2

Query: 404 CGSPGAC---IAPNICRCPGGVEAPSCGNGGLYPYPVRTQGGCRRICMNGGTC----TNG 562
           C + G C   I    C+CP G +  +C         +         C NGGTC     + 
Sbjct: 193 CQNGGTCLDLIGSYSCKCPKGFQGQNC--------ELNVDDCKPNPCQNGGTCHDLVNSF 244

Query: 563 TCACAPGWSGGVLHRTDM*GAMSARRPLYCARTDACVSTVS----------PGPRCEID 709
           +C+C  G  G +         +   RP  C     C+  V            GPRCE D
Sbjct: 245 SCSCPSGTLGYICEIN-----VDDCRPGACHNNGTCLDKVGGFECKCPPGFVGPRCEGD 298



 Score = 25.4 bits (53), Expect = 0.62
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
 Frame = +2

Query: 440 CRCPGGVEAPSCGNGGLYPYPVRTQGGCRRICMNGGTCTNGT----CACAPGWSGGV 598
           C CP G     CG    Y     T       C N  TC        C C  GW+G V
Sbjct: 85  CHCPYGYTGKDCGE---YVDWCSTNP-----CENQATCVQNKNQYQCLCGVGWTGKV 133



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
 Frame = +2

Query: 533 CMNGGTCT----NGTCACAPGWSG 592
           C NGG CT       C C  G+ G
Sbjct: 347 CQNGGVCTTIHAGHKCTCPEGFYG 370


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +3

Query: 600 CTEPICKEPCLHGGRC--IAPGQM 665
           C EP C EP    GRC    PG +
Sbjct: 89  CPEPTCDEPVHRPGRCCKTCPGDL 112


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
 Frame = -1

Query: 591 PLQPGAQAHVPFVHVPPFMQMRRQPPCV-LTG*GYKPPFPQEGASTPPGHRQMFGAIQAP 415
           PL PGA    P+    P             +  G  PP P  G S  P H     AI  P
Sbjct: 195 PLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHP--GLSPHPPHLSSHPAIVTP 252

Query: 414 GEPQ 403
           G  Q
Sbjct: 253 GPKQ 256


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
 Frame = -1

Query: 591 PLQPGAQAHVPFVHVPPFMQMRRQPPCV-LTG*GYKPPFPQEGASTPPGHRQMFGAIQAP 415
           PL PGA    P+    P             +  G  PP P  G S  P H     AI  P
Sbjct: 87  PLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHP--GLSPHPPHLSSHPAIVTP 144

Query: 414 GEPQ 403
           G  Q
Sbjct: 145 GPKQ 148


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 392 CRPDCGSPGACIAPNICRCPGG 457
           C P  G  G C  P+IC  P G
Sbjct: 48  CGP--GQSGQCFGPSICCGPFG 67


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 485 GLYPYPVRTQGGCRRI 532
           GLYP  ++T G C+R+
Sbjct: 21  GLYPSYLQTVGKCQRL 36


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 167 NNSSWHHHPCHRIRCR 120
           NN + HHH  H I  +
Sbjct: 318 NNQNHHHHAGHHIHAQ 333


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,907
Number of Sequences: 336
Number of extensions: 4377
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)