Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P17
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    30   0.39 
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    27   4.8  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    26   8.5  

>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 435 TSVDVQEESRRLPVGMAVYTLIQSGHKAVVDASA*TEA 548
           + VDV+ E++ +P G+  Y + ++G K +VDA   TEA
Sbjct: 139 SQVDVRVEAK-IPGGVDTYAIDENGQKHIVDARMWTEA 175


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  RREHRSLYLTLPVAVPERGYRPSGHPRDH 107
           R  +R+L LT  +A+  +  +PS HP +H
Sbjct: 747 RLAYRALTLTQEIALVNKHVQPSKHPSNH 775


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 351 GHPDLIHCCVSSHYADQTA 407
           G P+ IHC V   + D+TA
Sbjct: 249 GFPEFIHCLVDMGFLDETA 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,872
Number of Sequences: 5004
Number of extensions: 64066
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)