Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P17
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   0.54 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   1.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.7  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   6.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 403 LRLARSLYSSEHLSMSRRSRGAFLWEWRFIPLSSQDTR 516
           LRLA+ L     L +SR  R    WE  +IPL  Q  R
Sbjct: 208 LRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPER 245


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 542 GGTCTNGTCAC 574
           GG+C NG C C
Sbjct: 92  GGSCRNGVCIC 102


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
 Frame = +2

Query: 494 PYPVRTQGGCRRICMNGGTCTNG----TCACAPGWS 589
           PYP+ T  G + +   GG    G    T  C   WS
Sbjct: 362 PYPLNTTNGRKGLLKGGGGYLLGIQCLTVVCLAFWS 397


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = +2

Query: 521 CRRICMNGGTCTNGTCAC 574
           C  +   GG C  G C C
Sbjct: 39  CHSLGKAGGHCEKGVCIC 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,782
Number of Sequences: 438
Number of extensions: 5546
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)