Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P16
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 34 0.031
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 34 0.031
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 33 0.055
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.13
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.38
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.38
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.51
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 30 0.51
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 29 0.89
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 29 0.89
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 29 1.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.6
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 2.7
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 3.6
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 3.6
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 4.7
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 26 6.3
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 8.3
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 8.3
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 8.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 8.3
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 26 8.3
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.9 bits (74), Expect = 0.031
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 3/132 (2%)
Frame = +2
Query: 263 TMRCLKAYASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSS 442
+M +++S S +S S + S +TTS+ ++ F S S +
Sbjct: 325 SMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLT 384
Query: 443 FEEVSPSDLAELQAHKSGSERRKSSDTTISAASLQSE---HTVTGTTPPEDKSQQYVTDF 613
S S A +H S KSS ++ S+++ S H T + S ++
Sbjct: 385 SSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSL 444
Query: 614 LERYVLDSDTDS 649
+ +L + + S
Sbjct: 445 SSKPILTASSSS 456
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 33.9 bits (74), Expect = 0.031
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 5/153 (3%)
Frame = +2
Query: 278 KAYASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVS 457
KA++S SG+ S D+ ++ S ++S +D++ S+S+ + SS S
Sbjct: 95 KAHSSSEASGSGSSS--DESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSS----S 148
Query: 458 PSDLAELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDS 637
S +E ++ GS+ SS ++ S +S + + + ++ E +S DS
Sbjct: 149 SSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSE----------DS 198
Query: 638 D-----TDSEGRKLNRAANNDGSQREIE*ENSS 721
D +DSE + +++ S E E+SS
Sbjct: 199 DSSSSSSDSESESSSEGSDSSSSSSSSESESSS 231
Score = 31.9 bits (69), Expect = 0.13
Identities = 28/132 (21%), Positives = 55/132 (41%)
Frame = +2
Query: 290 SPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDL 469
S + +S S D E+ S + +S+ S ++ S+ + S S E S D
Sbjct: 193 SSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSED- 251
Query: 470 AELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTDS 649
++ + S SE SS + S+++ S+ ++ D + ++ + SD+DS
Sbjct: 252 SDSSSSSSDSESESSSKDSDSSSN-SSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDS 310
Query: 650 EGRKLNRAANND 685
+ +N D
Sbjct: 311 SSSSEDGNSNTD 322
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 33.1 bits (72), Expect = 0.055
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 8 LEEVYYAYCWLLNNFKTVGTTGKRIVFAGDSAGANLVAACTVKILSTGLRKPDGM 172
L +V +Y +LL + K + I+F GDS+GA L+ A V I + L P G+
Sbjct: 189 LHDVLSSYLYLLKSTKP-----ENIIFMGDSSGAGLIVASLVLIRDSKLPLPAGV 238
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 31.9 bits (69), Expect = 0.13
Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Frame = +2
Query: 278 KAYASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTN-GFLKVSQSQEGISEGPSSFEEV 454
K YA S +S S + E S + T DT+ L+ ++S + +S +
Sbjct: 413 KGYAYSITSSHSNHSNEKFEQIPSPDEKLSRTDIDTHVKQLQTTKSTDSLSIPFVESPQQ 472
Query: 455 SPSD-LAELQAHKSGSERRKSSDTTISAA----SLQSEHTVTGTTPPEDKSQQYVTDFLE 619
+P + L++ ++ G + K D +S S+ S ++ +P + S + + L+
Sbjct: 473 NPEEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSVNSPFLYSPSKQPSGELDEENLK 532
Query: 620 RYVLDSDTDSEGRKLNRAANNDGSQREIE*ENSSTLVAEKPLT 748
+ DSD D E + N+ + E+E + +++P T
Sbjct: 533 LRLQDSDVDDEVATIRSLKQNNATNSEVETVTNDPSFSQQPGT 575
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 30.3 bits (65), Expect = 0.38
Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Frame = +2
Query: 275 LKAYASPNMSGNSKDSKDDKE-NNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEE 451
L + AS ++ +S + ++ SV+P+++S+ ++ +S S SSF
Sbjct: 14 LSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSF-- 71
Query: 452 VSPSDLAELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVL 631
SP+ + + + S S ++ SS + +S + T + + P S + ++
Sbjct: 72 TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLV 131
Query: 632 DSDTDS 649
S + S
Sbjct: 132 ASSSSS 137
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.38
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Frame = +2
Query: 293 PNMSGNSKDSKDDKENNQSVLPNT-TSTPSDTNGFLKVSQSQEGISE----GPS-SFEEV 454
P S K ++ + + LPN T+ DTN K++ S+E I+ GPS + E+
Sbjct: 413 PQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTN---KLTASKEQIASPKRPGPSDNGNEI 469
Query: 455 SPSDLAELQAHKSGSER-RKSSDTTISA-------ASLQSEHTVTGTTPPEDKSQ 595
+ ++ K G +R TT+SA AS Q +HT + PP+ SQ
Sbjct: 470 PTKFVQKVTITKEGKKRVAPQLLTTLSATPSTSRLASTQLQHTGSSQLPPQQFSQ 524
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.51
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 275 LKAYASPNMSGNSKDSKDDKENNQSVLP----NTTSTPSDTNGFLKVSQSQEGISEGPSS 442
+K S S S + +E ++V+ +S+ S + S+S+ SE
Sbjct: 128 VKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEE 187
Query: 443 FEEVSPSDLAELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQ 598
E V ++ + + +S S+ SSD++ + S + ED+ ++
Sbjct: 188 EEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKR 239
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 29.9 bits (64), Expect = 0.51
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +2
Query: 329 DKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFE-------EVSPSDLAELQAH 487
+ ENN + TPS+ F + Q + + + +E E+ P+D
Sbjct: 99 EHENNSDY---ASITPSNHPAFTSCAYLQNPVVDSNNEYESKFRLSLEIPPTDFLSTSTE 155
Query: 488 KSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQ 598
S E S++T+ S S + T+T T E +S Q
Sbjct: 156 LSKRESCLSTETSSSKFSAVTAATITNETQSEKRSSQ 192
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 29.1 bits (62), Expect = 0.89
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 332 KENNQSVLPNTTS-TPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQAHKSGSERR 508
K N +LPN TS + D N + +E S+ SS ++ + A+ + + ++
Sbjct: 432 KNQNDQILPNETSESDDDANSISSMENEEERTSDSKSSAKQGKGNGRAKETPEEKRARKK 491
Query: 509 KSSD 520
K+ +
Sbjct: 492 KTKE 495
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.89
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Frame = +2
Query: 353 LPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSP-SDLAELQAHKSGSERRKSSDTTI 529
L S PS N F S+ G S E +L + + + K+++ T+
Sbjct: 107 LQGNVSLPSGNNFFTSSFDSENISKPGEVSLSESQLLGNLNQQSSIQLPDRMPKTTNGTL 166
Query: 530 SAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTDSEGRKLNRAANND 685
+ ++ + TV +D SQQ+ Y+ D+D+ G +N A+ D
Sbjct: 167 ADPNMPPKTTVNDQDVTKDASQQFGGSNFSNYLRDNDSFQFG--MNTDASGD 216
>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 29 YCWLLNNFKTVGTTGKRIVFAGDSAGANLVAACTVKILSTGLRKP 163
YC+ N T+G +I G SAG N+ A + K+ ++ P
Sbjct: 160 YCY--ENADTLGINPNKIAVGGSSAGGNIAAVLSHKVAASPANFP 202
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 335 ENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQ 481
+NN +V P T T D+ + +++ PSSFE+ + D ++L+
Sbjct: 395 QNNSAVQPTTQKTSEDSTDLH--TNEIPNVAQPPSSFEKENNKDTSKLE 441
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 284 YASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEG 433
+ SPN+ NSK + +N S +P++ T S+ + L V S++ IS G
Sbjct: 210 HVSPNVKNNSKKTASSVNSNHSSIPSSI-TKSNISS-LDVYGSEKLISSG 257
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +2
Query: 425 SEGPSSFEEVSPSDLAELQA---HKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQ 595
S+ +S +++S SD E Q+ K ++RKS S+ S SE + +K++
Sbjct: 920 SQQKASEDDMSLSDDEEKQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSDARNKTK 979
Query: 596 QYVTD---FLERYVLDSDTDSEGRK 661
+ + E Y D D+D+EG +
Sbjct: 980 KRRVNRRVISEEYTFDQDSDAEGNQ 1004
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 308 NSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDL 469
NSK S+ + N + TS+P + SQ Q I++ EE PSDL
Sbjct: 686 NSKISEKQENNVAETILEVTSSPKSSEN----SQKQSEITKKRGRDEEDEPSDL 735
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 3.6
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = +2
Query: 287 ASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEE----V 454
+S + S +S S ++ S ++++PS + K S S S P+S V
Sbjct: 183 SSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIV 242
Query: 455 SPSDLAELQAHKSGSERRKSSDTTISAAS 541
S + A S S S + +S+AS
Sbjct: 243 SNAKTASTDDSSSASSATSSVSSVVSSAS 271
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.7
Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Frame = +2
Query: 323 KDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEV-SPSDLAELQAHKSGS 499
K ++ S LPN +T S N +K S ++ PS+ + P+ +L K+
Sbjct: 30 KSISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSSVQLNVSKNNG 89
Query: 500 ERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLD--SDTDSEGRKLNRA 673
+ +S+ + G K+++ + E+ +D S S+ ++
Sbjct: 90 HKASDIVDAVSSKDEELRKHAKG-EGKRSKNRKRSSKHSEKQAVDLKSSNSSQETSSSKG 148
Query: 674 ANNDGSQREIE 706
+ N+ S+R E
Sbjct: 149 SVNNKSERSRE 159
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 4.7
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 5/162 (3%)
Frame = +2
Query: 140 LSTGLRKPDGMFLAYAPLNVNFVP--SPARLLCLMDPILPFGFTMRCLKAYASPNMSGNS 313
LS G+ K ++ + +F P PA L D I ++R KA + G
Sbjct: 140 LSLGVSKALLDYVIFCHQEESFWPLSEPANLKKRFDEIFE---SLRYAKAL--DQIKGLK 194
Query: 314 KDSKDDKENNQSVLPNTTSTPSDTNGF-LKVSQSQEGISEGPSSFEEVSP--SDLAELQA 484
+D + + +Q+ L + S L+V +S + IS S EE+ ++ A LQ
Sbjct: 195 RDQETQVKVDQATLTHYRSDKERAEKIELRVHESLKRISCIRSKVEELDQEITETARLQD 254
Query: 485 HKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTD 610
S I+ L+S+ + TT + KSQ +TD
Sbjct: 255 ELFKSTEEYEQQM-ITIRHLESQSDIINTTINDLKSQMTITD 295
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Frame = +2
Query: 299 MSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEG-------ISEGPSSFEEVS 457
+ GN S + + S P P T+ K + ++EG ++ EEV
Sbjct: 61 VGGNIHSSSNQQRQKNSEAPRINEIPPSTSSVEKSTTIPNSSVVLDHLLNEGENTLEEVK 120
Query: 458 PSDLAELQAHKSGSE 502
PS++ + S SE
Sbjct: 121 PSEIHPHMSWSSKSE 135
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = -1
Query: 271 PHREPEGEYRVH*AQQPRRARHEVHVERSIRQEHAVRLTQAGR*YLHSASRDQIGTSRIP 92
PH E A+QP RA+ E S+ QE +T G+ + + S IP
Sbjct: 369 PHPTAETVEIARFAEQPVRAQQPEQYESSVVQEATETVTDVGKGVSSTVKNEVNVPSTIP 428
Query: 91 GE 86
E
Sbjct: 429 TE 430
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 464 DLAELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYV 628
+ L+ SGS R S D T S + HT T P E + + F E +V
Sbjct: 1033 EAGSLRESMSGSSRNSSGDYTDSMSQDAPNHT---TEPSERRDSSTSSHFEEHFV 1084
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 275 LKAYASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQS 412
LK Y PN+ + K+ + PN + FLKV S
Sbjct: 959 LKKYDQPNLKVSGKNDSFVTHHTPGAFPNDSKNKELNRHFLKVDDS 1004
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 8.3
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +2
Query: 335 ENNQSVLPNTTSTPSDT-NGFLKVSQSQEGISEGP--SSFEEVSPSDLAELQAHKSGSER 505
+NN P T S T + + S +Q IS P S+ + + S+ AEL + S +
Sbjct: 1370 QNNFISKPFNVHTLSTTLSPWAMKSLAQAAISPNPMPSAHDLLPTSNPAELFTNISPEIK 1429
Query: 506 RKSSDTTISAASLQSEHTVT 565
S D+T + L S H V+
Sbjct: 1430 ELSVDSTSTLGGLNSSHLVS 1449
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 8.3
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Frame = +2
Query: 290 SPNMSGNSKDSKDDKENNQSVLPNTTSTPS----DTNGFLKVSQSQEGIS---EGPSSFE 448
+PN ++ +D ++++ LP+ S+PS T + + S G S G SF
Sbjct: 140 TPNRIYGDRNRQDYAQSSRYTLPSLPSSPSYNCPTTLRKIHTNTSSNGTSRRVSGLGSFM 199
Query: 449 EVSPSDLA--ELQAHKSGS---ERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDF 613
+ S+ + A+ GS E+ K S T+ AS+ S H+ T + + + T
Sbjct: 200 AQNSSETSSNRTSAYLPGSSTDEQEKRSSVTL--ASMPSSHSSTASLLSPLDTTSFSTK- 256
Query: 614 LERYVLDSDTD 646
L+ +L +TD
Sbjct: 257 LDSTILALETD 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,274
Number of Sequences: 5004
Number of extensions: 60602
Number of successful extensions: 276
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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