Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P16
(892 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 4e-24
SB_11303| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_48031| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.058
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 34 0.18
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016) 32 0.72
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.72
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 32 0.72
SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_44206| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_39357| Best HMM Match : SASP_gamma (HMM E-Value=1.7) 30 2.9
SB_34153| Best HMM Match : DUF972 (HMM E-Value=0.17) 30 2.9
SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5) 29 3.8
SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96) 29 3.8
SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042) 29 5.1
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.1
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 29 5.1
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_3701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14) 29 6.7
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 28 8.8
SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 8.8
SB_4162| Best HMM Match : GMAP (HMM E-Value=3) 28 8.8
SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5) 28 8.8
>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 109 bits (261), Expect = 4e-24
Identities = 49/94 (52%), Positives = 63/94 (67%)
Frame = +2
Query: 8 LEEVYYAYCWLLNNFKTVGTTGKRIVFAGDSAGANLVAACTVKILSTGLRKPDGMFLAYA 187
LEE ++AY W L N +GTT + + AGDSAG NL A ++ G+R+PD + AYA
Sbjct: 70 LEECFFAYAWALKNPDKLGTTLEYVCVAGDSAGGNLSVALCMRAAEYGIRRPDSVLAAYA 129
Query: 188 PLNVNFVPSPARLLCLMDPILPFGFTMRCLKAYA 289
P NV ++PSP+RLL LMDP+LP G CLKAYA
Sbjct: 130 PFNVQYIPSPSRLLSLMDPLLPTGILEACLKAYA 163
>SB_11303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +2
Query: 2 TGLEEVYYAYCWLLNNFKTVGTTGKRIVFAGDSAGANLVAACTVKILSTGLRKPDGMFLA 181
T + + Y LLNN G KR++ GDSAG N+ AA T + R +LA
Sbjct: 713 TSMMDCYNVAIELLNNGSQYGINVKRVMVGGDSAGGNIAAAVTHTLAGVAERHCSKQYLA 772
>SB_48031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 35.5 bits (78), Expect = 0.058
Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 2/142 (1%)
Frame = +2
Query: 302 SGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQ 481
S N+ + D N S NT++ SD+N + S G S S D
Sbjct: 147 SNNTSNGDSDSSNGDSDSNNTSNGDSDSNNASNGDSDRNNASNGDSDSNNASNGDSDSNN 206
Query: 482 AHKSGSERRKSS--DTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTDSEG 655
A S+ +S D+ + AS + + D + D + D+DS
Sbjct: 207 ASNGDSDSNNASNGDSDSNNASNGDRDSNNASNGDRDSNNASKGDSDSNNASNGDSDSNN 266
Query: 656 RKLNRAANNDGSQREIE*ENSS 721
+ +N+ S + + N+S
Sbjct: 267 ASNGDSDSNNASNGDSDSNNAS 288
Score = 33.5 bits (73), Expect = 0.23
Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 2/144 (1%)
Frame = +2
Query: 296 NMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAE 475
N +GN ++ N S NT++ SD+N S S G S S D
Sbjct: 118 NNAGNGDSDSNNTSNGDSDSNNTSNGDSDSN---NTSNGDSDSSNGDSDSNNTSNGDSDS 174
Query: 476 LQAHKSGSERRKSS--DTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTDS 649
A S+R +S D+ + AS + + D + D + D DS
Sbjct: 175 NNASNGDSDRNNASNGDSDSNNASNGDSDSNNASNGDSDSNNASNGDSDSNNASNGDRDS 234
Query: 650 EGRKLNRAANNDGSQREIE*ENSS 721
+N+ S+ + + N+S
Sbjct: 235 NNASNGDRDSNNASKGDSDSNNAS 258
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 33.9 bits (74), Expect = 0.18
Identities = 34/120 (28%), Positives = 50/120 (41%)
Frame = +2
Query: 302 SGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQ 481
SGN + S+D K N S V Q+G EG + V+PS E
Sbjct: 327 SGNCQQSEDAKAGEGGAKMNDRSGKDSEGAQEAVVTQQKGTDEGKRAC--VNPSG-GESS 383
Query: 482 AHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTDSEGRK 661
AHK SER+K + + L SE++ TG E K + T + + + +GR+
Sbjct: 384 AHK--SERKKKTPKK-NKNQLDSENSNTGNVENEKKGTKDKTKKKSKNNSKNIEEEDGRE 440
>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
Length = 999
Score = 31.9 bits (69), Expect = 0.72
Identities = 23/89 (25%), Positives = 38/89 (42%)
Frame = +2
Query: 266 MRCLKAYASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSF 445
++ ++A + SGN K K +++ Q L + S P+D + EG SEG +
Sbjct: 93 VKLIRAAVNALKSGNKKPRKRNRQVKQVELRDNNSVPTDGSTKTASLSPSEGTSEGDADQ 152
Query: 446 EEVSPSDLAELQAHKSGSERRKSSDTTIS 532
E S Q +GS ++ IS
Sbjct: 153 EPNKASASHYTQKKTTGSSSTEALREDIS 181
>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 31.9 bits (69), Expect = 0.72
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 5 GLEEVYYAYCWLLNNFKTVGTTGKRIVFAGDSAGANLVAACTVKILSTGL 154
GL + YA W+ NN + G ++ G SAG + + L+TGL
Sbjct: 172 GLLDQIYALKWVQNNIERFGGDRSQVTIGGLSAGGESASILMLSPLATGL 221
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 31.9 bits (69), Expect = 0.72
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +2
Query: 323 KDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSP-SDLAELQAHKSGS 499
+ + Q V+ + + +TN ++ ++ + E ++E V P S+L +L +
Sbjct: 130 QQQSQGKQGVVLSNDNVMKNTNNSMQSHENSD--LEVKVAYEHVRPPSELRKLFGESTLG 187
Query: 500 ERRKSSDTT-ISAASLQSEHTVTGTTPP 580
++ SSDTT ISA + T TG PP
Sbjct: 188 AKKLSSDTTSISALKPDAGITKTGIVPP 215
>SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +2
Query: 392 FLKVSQSQEGISEGPSSFEEVSPSDLAELQAHKSGSERRKSSDTTISAASLQSEHTVTGT 571
F K EG G FEE D ++ G+ER SS+ +S S+ S+ +
Sbjct: 215 FNKTEVGAEG--SGYLWFEEAESDDESDKVEDVWGAERESSSEDEVS--SIASDISSLPD 270
Query: 572 TPPEDKSQQYVTDFLE 619
TPP + S+ + + LE
Sbjct: 271 TPPPEDSRLFYNEVLE 286
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +2
Query: 314 KDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSP----SDLAELQ 481
K ++ KE+ S LP+T ++ V QSQE + SS ++V P S L E Q
Sbjct: 333 KHMEERKESFDSGLPDTPTSLGSAGSCEDVFQSQESLHADTSSRQDVPPETDSSMLQERQ 392
Query: 482 AHKSGSERRKSSDTTI 529
+G++ + + T +
Sbjct: 393 PRCNGADEKPNLKTQL 408
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 30.3 bits (65), Expect = 2.2
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 3/146 (2%)
Frame = +2
Query: 317 DSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQAH--K 490
DS++ +E + + + + K+S++ E + E S P D+A+ + +
Sbjct: 721 DSEESEEEEEEIKEKDIAEQLEEEN--KISEASEVLVERASEIGSAKPKDVADKSSSNVE 778
Query: 491 SGSERRKSSDTTISAASLQSEHTVTGTTPPEDK-SQQYVTDFLERYVLDSDTDSEGRKLN 667
+ + ++ T S QS+ + G PE+K +Q V D E + D E K+
Sbjct: 779 IHTVPQTTNFVTPEETSWQSK-ALEGKEEPEEKVEEQKVVDMNEDVPVMEDKLEEAAKVA 837
Query: 668 RAANNDGSQREIE*ENSSTLVAEKPL 745
D +I+ E+ E PL
Sbjct: 838 NDNKIDYDIVDIKKESLQMTAQENPL 863
>SB_44206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +2
Query: 467 LAELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTD 646
LA HK +S T + A +Q E +T TTP + + +E +++ T
Sbjct: 274 LAYFDNHKQTILNVDASSTGLGAVIIQEEPPLTDTTPVSEPEDVIGINLIENLGIENST- 332
Query: 647 SEGRKLNRAANNDGSQREI 703
+K A++ND + R +
Sbjct: 333 --LKKFRDASSNDETSRVV 349
>SB_39357| Best HMM Match : SASP_gamma (HMM E-Value=1.7)
Length = 244
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/128 (18%), Positives = 53/128 (41%)
Frame = +2
Query: 311 SKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQAHK 490
++D+ ++ N+ + + +S P D ++ + + ++ +E +LAELQ
Sbjct: 2 NQDNSALQKENERLQSSESSEPGDNAEIRRLRAESAALQKSLANAQEKHHQELAELQ--- 58
Query: 491 SGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTDSEGRKLNR 670
++ +SS A+ + + + E S QY T R +L + D +
Sbjct: 59 ---QKIRSSSFLKEPAASEEQTNGKAVSQHEQPSSQYKTVSQVRQILQDELDEFRESVLE 115
Query: 671 AANNDGSQ 694
+ D S+
Sbjct: 116 SMETDRSE 123
>SB_34153| Best HMM Match : DUF972 (HMM E-Value=0.17)
Length = 473
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/128 (18%), Positives = 53/128 (41%)
Frame = +2
Query: 311 SKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQAHK 490
++D+ ++ N+ + + +S P D ++ + + ++ +E +LAELQ
Sbjct: 94 NQDNSALQKENERLQSSESSEPGDNAEIRRLRAESAALQKSLANAQEKHHQELAELQ--- 150
Query: 491 SGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTDSEGRKLNR 670
++ +SS A+ + + + E S QY T R +L + D +
Sbjct: 151 ---QKIRSSSFLKEPAASEEQTNGKAVSQHEQPSSQYKTVSQVRQILQDELDEFRESVLE 207
Query: 671 AANNDGSQ 694
+ D S+
Sbjct: 208 SMETDRSE 215
>SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +2
Query: 467 LAELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTD 646
LA HK +S T + A +Q E +T TTP + + +E +++ T
Sbjct: 501 LAYFDNHKQTILNVDASSTGLGAVIIQEEPPLTDTTPVSEPEDVIGINLIENLGIENST- 559
Query: 647 SEGRKLNRAANNDGSQREI 703
+K A++ND + R +
Sbjct: 560 --LKKFRDASSNDETSRVV 576
>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
Length = 895
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +2
Query: 425 SEGPSSFEEVSPSDLAELQAHKSGSERR--KSSDTTISAAS-LQSEHTVTGTTPPEDKSQ 595
+E P+ F E+S DLA L+ G++RR + D +A+S + +V G E K++
Sbjct: 3 AESPALFAELSKKDLASLKGGGGGADRREARKEDRRKTASSGGKGGGSVGGRGGRETKTK 62
Query: 596 QY-VTDFLERYVLDSDTDSEGR 658
+ DF R D +++ R
Sbjct: 63 KVKKKDFRNRNDEDDTNEADSR 84
>SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 719 WSFPIRSPSASHRCWLLYSVSAPRSQYHCPARN 621
WS+ + +P+A +C LLYSV + PA++
Sbjct: 225 WSYVLDAPTADAKCRLLYSVLQNAVDIYFPAKS 257
>SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96)
Length = 651
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 557 TVTGTTPPED-KSQQYVTDFLERYVLDSDTDSEGRKLNRAANNDGSQREIE*ENSSTLVA 733
++T T P D +S+Q+ FL++ V+ +T++ R N+D + I N +TLV+
Sbjct: 358 SITALTSPNDYRSEQHYDSFLDKRVVQYNTNTSARCSKYCTNSDIT---IFVGNMTTLVS 414
Query: 734 EKPLT 748
LT
Sbjct: 415 SVNLT 419
>SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)
Length = 440
Score = 29.1 bits (62), Expect = 5.1
Identities = 26/109 (23%), Positives = 43/109 (39%)
Frame = +2
Query: 470 AELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYVTDFLERYVLDSDTDS 649
AEL K S+ KSS ++ +Q + V G QQ + D +R ++ T
Sbjct: 232 AELALQKKYSDELKSSQDELNDFVIQLDEEVEGMQSTIMTLQQQIKDIKQRLATETTTSQ 291
Query: 650 EGRKLNRAANNDGSQREIE*ENSSTLVAEKPLTVPTEXXGPDNXMXIKP 796
E R S+ + E ++TL + ++ D M I+P
Sbjct: 292 ELRTKCHQVEKCLSEAK---EQNATLSLSLQQRLESKDTKDDEPMEIEP 337
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 482 AHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQ 598
+HKSGS +RKSS+ A H +PP+ S+Q
Sbjct: 646 SHKSGSRKRKSSNPA-HAVPQGQRHIQAVPSPPDSYSEQ 683
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 347 SVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQAHKSGSERRKSS 517
S+ PNT ST + NG L ++ G +E + VSP + + L +GS +SS
Sbjct: 156 SINPNTHSTAVN-NGALTDEKTLAGSTEKSQEEKVVSPEEDSNLDGTSNGSPSEESS 211
>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1845
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 329 DKENNQSVLPNTTSTPSDT---NGFLKVSQSQEGISEGPSSFEEVSPSDLAELQAHKSGS 499
DK+ + SVLP + P+ T + ++ Q+ E ++ ++S S QAH G
Sbjct: 361 DKKKSYSVLPEMSGQPAHTRTGSSLVEEQQAAEKVTTNKMQMIDLSYSTKYLSQAHSLGV 420
Query: 500 ERRKSS 517
RK S
Sbjct: 421 GTRKPS 426
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 188 PLNVNF-VPSPARLLCLMDPILPFGFTMRCLKAYASPNMSGNSKDSKD 328
P+N+ F +PSP L + P+ PFG+ + Y SG++K +D
Sbjct: 2366 PVNLQFALPSPTSLDVIWSPV-PFGYQNGIILGYKITCTSGSTKIYQD 2412
>SB_3701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 28.7 bits (61), Expect = 6.7
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +2
Query: 269 RCLKAYASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGIS--EGPSS 442
R LKAY PN++ + S+ + +N+ P+ + S N + SQ+ E + + PS
Sbjct: 4 RRLKAYVEPNLNRVKQPSQATESSNRVKQPSQATESS--NRVKQPSQATESSNRVKQPSQ 61
Query: 443 FEEVSPSDLAELQAHKSGSERRKSSDTTISAASLQSEHTVT 565
E S QA +S + ++ S T S+ ++ T
Sbjct: 62 ATESSNRVKQPSQATESSNRVKQPSQATESSNRVKQPSRAT 102
>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
Length = 1030
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 608 DFLERYVLDSDTDSEGRKLNRAANNDG-SQREIE*ENSSTLVAEKPLTVPTEXXG 769
+ LER DT G + + + + +Q E ENSSTL +E+ L+ P E G
Sbjct: 564 NLLERASQIRDTPFSGESTDSSDHEEEHTQEETVSENSSTLQSEESLSEPLEDSG 618
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 232 AQQPRRARHEVHVERSIRQE-HAVRLTQAGR*YLHSASRDQIGTSRIPGEHYSFTRSS 62
A PR+A + + Q+ A R QA R S ++D+ TSR PG+ T++S
Sbjct: 414 AASPRQASRKTKTRKPQDQDKQAARQRQASRKTKTSKTQDRQATSRRPGQASRKTKTS 471
>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 356
Score = 28.3 bits (60), Expect = 8.8
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Frame = +2
Query: 299 MSGNSKD-SKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAE 475
M G S D S +K + + T +P N S + P+S + SD+
Sbjct: 1 MGGCSTDVSYSEKFSRARLWLKTLRSPIKINVIRPNPLSTFTTTARPNSQSTFTTSDIPN 60
Query: 476 LQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPP 580
Q+ + SER S T + A S+ T T T P
Sbjct: 61 SQSTFTTSERPNSQSTFTTTARPNSQSTFTTTARP 95
>SB_4162| Best HMM Match : GMAP (HMM E-Value=3)
Length = 219
Score = 28.3 bits (60), Expect = 8.8
Identities = 23/93 (24%), Positives = 36/93 (38%)
Frame = +2
Query: 416 EGISEGPSSFEEVSPSDLAELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQ 595
E IS+ P +E+ D ++ S +R S T+ + + PP K
Sbjct: 110 EVISDDPEIQKEIKNEDDVVWAHIRAASLKRMQSQTSFKRLKKEGSISEVPEPPPSAKGS 169
Query: 596 QYVTDFLERYVLDSDTDSEGRKLNRAANNDGSQ 694
+ E Y D D D+ G N A + GS+
Sbjct: 170 EDSDSSDENYDNDDD-DTGGHVDNDAGDKKGSK 201
>SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5)
Length = 191
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 754 WDC*RFFGDQCTGVFLFDLPLRAIVVG--CSIQFPPL 650
W C R F + G ++ PL AIV+G S+ PPL
Sbjct: 15 WGCVRVFIYRHYGGVAYECPLTAIVLGLRASVHLPPL 51
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,646,021
Number of Sequences: 59808
Number of extensions: 506470
Number of successful extensions: 1774
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1770
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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