Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P15
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 38 0.001
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.50
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.5
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.7
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 6.2
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 6.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 6.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 8.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.2
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 8.2
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +2
Query: 134 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 313
DI FD + H+ LI L + R + +IR L N + T +R ++ G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 314 GSALSPLLFSLYINDI 361
GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.50
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 249 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 425
++D+ RVP P S + K+PPS I + P L+ P RSS +P T
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243
Query: 426 GRRRCFIDDFRPQLPP 473
+ I D PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 485 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 601
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 654 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 764
P SN + ST H P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 258 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 413
+ +++R P+ P R PP R + I I PGL SS TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 715 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 611
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 244 VRQVVSYDEHEPVWHSHV 191
+R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +2
Query: 362 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 532
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 533 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 622
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 302 GVPQGSALSPLLFSLYINDI 361
G+PQGS LS L Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.2
Identities = 49/188 (26%), Positives = 69/188 (36%), Gaps = 8/188 (4%)
Frame = +3
Query: 207 TGSCSSYETTCR-TVRSDIESRERVPGPVTSQPES-RKAPPSPRYYSVCI-STIYP---- 365
TG SS T TV S +P P TS + + P P + C ST P
Sbjct: 181 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGS 240
Query: 366 -GLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSK 542
L PI + P T S+T + P + S S +T T S+
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS-CTTSTSIPPTGNSTT 299
Query: 543 GVALRTPR*ASLSRLGASITPPPPFAQSRCTTSPYRGPRRSNI*ASPSTVG*HSAPTSRR 722
V P ++ S + TPPPP + S TS P S + +++ T+
Sbjct: 300 PVTPTVPPTSTSS----TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPV 355
Query: 723 YAIVPPSS 746
VPP+S
Sbjct: 356 TPTVPPTS 363
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 533 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 703
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 704 RPHIKTVRDR 733
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,885,474
Number of Sequences: 5004
Number of extensions: 89318
Number of successful extensions: 297
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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