Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P15
(883 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 32 0.58
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 31 0.77
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami... 31 1.0
At1g10620.1 68414.m01204 protein kinase family protein contains ... 31 1.0
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 31 1.3
At1g08170.1 68414.m00902 histone H2B family protein similar to h... 31 1.3
At3g24540.1 68416.m03082 protein kinase family protein contains ... 30 1.8
At5g06970.1 68418.m00789 expressed protein 30 2.4
At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17... 30 2.4
At5g24570.1 68418.m02901 expressed protein 29 3.1
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in... 29 3.1
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 29 4.1
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c... 29 4.1
At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative sim... 29 4.1
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 4.1
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 5.4
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 7.2
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 7.2
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 28 7.2
At3g11680.1 68416.m01432 expressed protein contains Pfam profile... 28 7.2
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 28 7.2
At2g07880.1 68415.m01007 hypothetical protein 28 7.2
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 28 7.2
At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) fami... 28 9.5
At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing pro... 28 9.5
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina... 28 9.5
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 9.5
At1g59453.1 68414.m06679 transcription factor-related weak simil... 28 9.5
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 31.9 bits (69), Expect = 0.58
Identities = 29/104 (27%), Positives = 39/104 (37%)
Frame = +3
Query: 300 PESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWD 479
PE+R P RY + P P TP + R R I D RP+ P +
Sbjct: 219 PETRPRTPDHRYATYDNRPRTPIHESAATERRPQTPETRPRTPEHRSAIPDTRPRTPIHE 278
Query: 480 SGSGSGASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPP 611
S + +G TP R + + R+P S S TP P
Sbjct: 279 S-AATGRRPQTPETRPRTAQR--RGRSPEFMERSPGPRSKTPEP 319
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = +3
Query: 159 SGTTV*YTNCITWECQTGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYY 338
+G + Y + W+C T S S + + I S P P P+ PP+P+
Sbjct: 49 TGHSFGYGDSKVWKC-TYSNGSAPAISISPSTPIPSTPSTPSPPPPAPKKSPPPPTPK-K 106
Query: 339 SVCISTIYPGLRRPIWRSSPMTPPS 413
S ++ P + P + SP PP+
Sbjct: 107 SPSPPSLTPFVPHPTPKKSPSPPPT 131
>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains similarity to Swiss-Prot:P29375
retinoblastoma-binding protein 2 (RBBP-2) [Homo
sapiens]; contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain; intron between exons 6 and 7 was
required to circumvent a frameshift. There could be an
underlying sequence error.
Length = 787
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/77 (22%), Positives = 31/77 (40%)
Frame = +3
Query: 246 VRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRV 425
++ D+ + P + + P SPR+ V + +RPI +P+ PS
Sbjct: 10 IKEDMSLKNHPPDKDKDKDTIMEQPSSPRHRKVVARWLPDEAQRPIINDAPVFTPSLEEF 69
Query: 426 GRRRCFIDDFRPQLPPW 476
+I+ RP P+
Sbjct: 70 VDPLAYIEKIRPLAEPY 86
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 285 PVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQ 464
P +QP + PP+P S+ P + P P PP +T G I +PQ
Sbjct: 68 PPPNQPPNTTPPPTPP------SSPPPSITPPPSPPQPQPPPQSTPTGDSPVVIPFPKPQ 121
Query: 465 LPP 473
LPP
Sbjct: 122 LPP 124
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 30.7 bits (66), Expect = 1.3
Identities = 36/121 (29%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Frame = +3
Query: 279 PGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFR 458
P P + S APP P + G +R P PP TR+ +C
Sbjct: 605 PPPSSRSIPSPSAPPPPPPPPPSFGST--GNKRQAQPPPPPPPPPPTRIPAAKCAPP--- 659
Query: 459 PQLPPWDSGSGS---GASTLTPR------KAQRCSSKGVALRTPR*ASLSRLGASITPPP 611
P PP S SGS G + P KA ++ P S +RLGA PPP
Sbjct: 660 PPPPPPTSHSGSIRVGPPSTPPPPPPPPPKANISNAPKPPAPPPLPPSSTRLGAPPPPPP 719
Query: 612 P 614
P
Sbjct: 720 P 720
>At1g08170.1 68414.m00902 histone H2B family protein similar to
histone H2B from Chlamydomonas reinhardtii [SP|P54347,
SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
SP|P16868]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 243
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 560 TTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAPK 661
TT+ IP+ R ++P P P+ + D+P P P+
Sbjct: 79 TTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPE 112
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 585 LGASITPPPPFAQSRCTTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 764
+ S++PPPP +T P G R ASPS + + +++ PPS +ST
Sbjct: 65 VNVSLSPPPPPRSPSTSTPPRLGNRNPPPPASPSGQEPTTPTMTPGFSLSPPSPSRLSTG 124
Query: 765 *YVG 776
VG
Sbjct: 125 AVVG 128
>At5g06970.1 68418.m00789 expressed protein
Length = 1101
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 300 PESRKAPP--SPRYYSVCISTIYPGLRRPIWRSSPMTPP 410
PES +PP +P V IS+ P + P W SP PP
Sbjct: 98 PESSGSPPKRAPPPIPVLISSSSPMVTNPEWCESPSAPP 136
>At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17
(CLE17)
Length = 99
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 585 LGASITPPPPFAQSRCTTSPYRGP 656
L AS PPPP R +T+P+RGP
Sbjct: 53 LVASPPPPPPRKALRYSTAPFRGP 76
>At5g24570.1 68418.m02901 expressed protein
Length = 70
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 570 ASLSRLGASITPPPPFAQSRCTTSPYRGPRRSNI 671
A+L+R+ A++ PPPP + R +P G S++
Sbjct: 16 AALTRITATLLPPPPTSHRRSVRAPTSGRADSSL 49
>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 373
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 182 CISNRCARLYRTPSLYRRRGLL 117
C+S R L RTP LYR R LL
Sbjct: 36 CVSVRLRSLVRTPELYRMRSLL 57
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 539 KRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAPK 661
K G P + T S P P + + +P+ P+T P P APK
Sbjct: 206 KSGSPVSPTTSPPAPPKSTSPVSPSSAPMT--SPPAPMAPK 244
>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
contains Pfam PF02138: Beige/BEACH domain; similar to LBA
isoform gamma (GI:10257405) [Mus musculus]; similar to
beige-like protein (CDC4L) - Homo sapiens; similar to
Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
protein homolog implicated in neuronal membrane traffic
(AKAP550) (GI:11863541) [Drosophila melanogaster].
Length = 1928
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = -1
Query: 580 ERDAQRGVRRATPFEEHRCAFRGVNVDAPLPEPLSHGGSCGLK--SSMKQRLL----PTR 419
ER + RR+ E+ G+N PL E S +K S +K+R++ T
Sbjct: 1485 ERKGENEERRSGSLEDAITLSTGINDHRPLSEQNMVQNSTEVKDLSELKERIVLEISSTM 1544
Query: 418 VVDGGVIGEERQMGLRRPGYIVDIQTE 338
V GV+ Q+ RR +IVDI+ +
Sbjct: 1545 VRPLGVVKGTFQITTRRINFIVDIRED 1571
>At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative
similar to monovalent cation:proton antiporter family 2
(CPA2) members (see PMID:11500563 for other members)
Length = 735
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 633 YIVIGRTAGAGLLTRLVGRGMLSVVFGGRPLLKSTAVLFVGL 508
YI+ G A G + R V GM++VV ++K + +F +
Sbjct: 232 YIICGLRADIGYMNRTVSVGMMAVVTSASVMVKILSTMFCSI 273
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 279 PGPVTSQPESRKAPPSPRY-YSVCISTIYPGLRRPIWRSSPMTPPST 416
P PV + P + ++PP P+Y + YP P ++ + PP T
Sbjct: 565 PPPVVNCPPTTQSPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPPPT 611
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 279 PGPVTSQPESRKAPPSPRYYSVCISTIYPG--LRRPIWRSSPMTPP 410
P PV P + PP P YY+ I + P P+ +S P PP
Sbjct: 635 PPPVYYPPVTASPPPPPVYYTPVIQSPPPPPVYYSPVTQSPPPPPP 680
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 28.7 bits (61), Expect = 5.4
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Frame = +1
Query: 34 RQTLVRPSSAPPHGAHLTRAEQAETH----SDRSPLLRYS-EGVR*SLAQRFDIQTV*HG 198
R L RP G +R++Q H S RS R + S + R
Sbjct: 467 RARLSRPLQKAGKGRQSSRSDQRSRHGAGRSGRSSFARLPPRSLASSRSARGAGSRAPSS 526
Query: 199 SARQARAHHTRLLVEPFVPISSRGNAFPAPSRHSRSP--ARLRPLPVTIQFVYQRYTPV 369
SA++A R P +P +R P P+R P AR RPLP + Y R PV
Sbjct: 527 SAKRASGSRGRR-PRPPLPPPARARPLPPPARARPMPPPARARPLPPPAR-SYDRRPPV 583
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.3 bits (60), Expect = 7.2
Identities = 43/155 (27%), Positives = 55/155 (35%)
Frame = +3
Query: 279 PGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFR 458
P V+S P S PPSP + T+ P+ +SP PPST
Sbjct: 58 PPVVSSPPPSSSPPPSPPVITSPPPTVASSPPPPVVIASP--PPSTPAT-TPPAPPQTVS 114
Query: 459 PQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPPFAQSRCTT 638
P PP S S +T P S G TP S G + +PP P + T
Sbjct: 115 PPPPPDASPSPPAPTTTNPPPKPSPSPPG---ETP-----SPPGETPSPPKPSPSTPTPT 166
Query: 639 SPYRGPRRSNI*ASPSTVG*HSAPTSRRYAIVPPS 743
+ P ASP + S PT PP+
Sbjct: 167 TTTSPPPPPATSASPPS----SNPTDPSTLAPPPT 197
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 551 PPNTTLSIPLPTRRVNNPAPAVRP-ITMYDQPIPWAP 658
PP T S+P PT V+ P P P + P+P P
Sbjct: 137 PPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDP 173
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 134 DIAKAFDKVWHNGLIYKLYNMGVP-DRLVLIIRDYLS 241
D+A+AF+ V H G + +YN+G +R V+ + + +S
Sbjct: 230 DVAEAFEVVLHKGEVNHVYNIGTTRERRVIDVANDIS 266
>At3g11680.1 68416.m01432 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 488
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 699 VILLSRVTPKYLTFGAHGMGW---SYIVIGRTAGAGLLTRLVGRGMLSVVFG 553
V LL V P Y++FG GM W + +V+ G L++ + RG +++ G
Sbjct: 58 VSLLYYVRPLYISFGVTGM-WAILTVVVVFEFTVGGTLSKGLNRGFATLIAG 108
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 548 RPPNTTLSIPLPTRRVNNP----APAVRPITMYDQPIP-WAPKVKYLGVTLDSRMTFRPH 712
+PP T S P+ V P +P V+P ++ P P ++P VK V T+ P
Sbjct: 410 KPPTPTYSPPIKLPPVKPPTPIYSPPVKPPPVHKPPTPIYSPPVKPPPVHKPPTPTYSPP 469
Query: 713 IK 718
IK
Sbjct: 470 IK 471
>At2g07880.1 68415.m01007 hypothetical protein
Length = 173
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 533 LFKRGRPP--NTTLSIPLPTRRVNNPAPAVRPITMYDQPIPW 652
L++ GR P + T I LP RV P P+ RPIT+ +P+
Sbjct: 75 LYQHGRVPPLSFTRPITLPPSRVL-PPPSTRPITLPHGRVPY 115
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 134 DIAKAFDKVWHNGLIYKLYNMGV--PDRLVLIIRD 232
D+A+AF+ V H G I +YN+G R++ + RD
Sbjct: 232 DVAEAFEVVLHKGEIGHVYNVGTKRERRVIDVARD 266
>At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) family
protein similar to RALF precursor [Nicotiana tabacum]
GI:16566316
Length = 129
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 203 ALPCYTVCISNRCARLYRTPSLYRRRGLLSEWVSACSALVRC 78
AL V R R Y T + +R RG + + CS++ RC
Sbjct: 86 ALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRC 127
>At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein low similarity to SP|Q01780
Polymyositis/scleroderma autoantigen 2 {Homo sapiens};
contains Pfam profiles PF00570: HRDC domain, PF01612:
3'-5' exonuclease
Length = 838
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 616 NGGGGVIDAPSRERDAQRGVRRATPF 539
NGGG VID ERD + PF
Sbjct: 133 NGGGSVIDVKMAERDKNSSGKAKVPF 158
>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 772
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 628 DVRPAHTVGPEGQIFRRHPRQ*DDIPPPHQ 717
D++P+ P+ +I+RR PR+ PPHQ
Sbjct: 407 DLKPS-AFDPKDKIWRRFPREGTKYTPPHQ 435
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +3
Query: 285 PVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQ 464
P +S P +PPS S S++ P P+ SP +PP +
Sbjct: 29 PSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPL-SLSPSSPPPPPPSSSPLSSLSPSLSP 87
Query: 465 LPPWDSGSGSGASTLTP 515
PP S S + S+L+P
Sbjct: 88 SPPSSSPSSAPPSSLSP 104
>At1g59453.1 68414.m06679 transcription factor-related weak
similarity to TFIIIC Box B-binding subunit [Homo
sapiens] GI:442362
Length = 1729
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 420 RVGRRRCFIDDFRPQLPPWDSGSGS 494
RV CF+ D+ LP WDS S S
Sbjct: 649 RVKLLHCFLWDYFSSLPGWDSASSS 673
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,423,619
Number of Sequences: 28952
Number of extensions: 522015
Number of successful extensions: 1933
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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