Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P14
(857 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR cla... 29 3.0
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 28 6.9
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 28 6.9
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 28 6.9
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 28 6.9
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 28 6.9
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 28 9.1
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 28 9.1
>At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 853
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = +2
Query: 41 HKMSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHL 220
H ST + P LL+ A CE + L S YD D I +NLT +L
Sbjct: 718 HGTSTKISLFTPTLLSFAACILISCERSFYLQFPAFS----YDWNRKDDEVISINLTPNL 773
Query: 221 RHANIRESESTV 256
++ E E TV
Sbjct: 774 NLSSEIEEEETV 785
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 68 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 226
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 68 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 226
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 336
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 336
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 386 AAATTAGDYALRARVSNNGSVSWIKRLDIGTPISMQLDNWPNDMQT 523
A T G + ++ V G+ + + +G IS L NW DM+T
Sbjct: 353 AETKTLGRWDIKCTVKGGGTTGQVGAIQLG--ISRALQNWEPDMRT 396
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 68 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 226
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 68 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 226
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,235
Number of Sequences: 28952
Number of extensions: 323209
Number of successful extensions: 930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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