Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P13
         (861 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   4.1  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   4.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.4  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 505 VTLTLRKPTANTCQARTSTHFTGKTCIRQRNPNTXASPDTNAPD 636
           VT  L+ P       + S+   GK   R + PN   + DT+  D
Sbjct: 52  VTFILKNPPNLNPAVQGSSLTEGKRSKRSKRPNGDTNGDTSQVD 95


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 420 PPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE 521
           P C   +++   SH +  +F+ ++S T    H E
Sbjct: 194 PTCSEASSSPTPSHSSESSFSAASSYTNTIYHQE 227


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 336 IASTVTEAGRRVRQTTRPRLQHGLPI 259
           I  ++TE+G R RQ TR + +  LP+
Sbjct: 577 IMRSITESGGRRRQ-TREKRKKSLPV 601


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,161
Number of Sequences: 336
Number of extensions: 4233
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)