Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P13
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    30   0.49 
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    29   1.1  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    28   1.5  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    27   3.4  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   3.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.4  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   4.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   7.9  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 454  PATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTCIRQRNPNTXASP-DTNA 630
            P T+ T +   PP+     +    P  ++    TST  T  T +    P T ++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 631  P 633
            P
Sbjct: 1703 P 1703


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 576 NLHPPAEPEHRRIARHERTGRL 641
           NL  PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 269 PCWRRGLVVWRTRRPASVTVEAICPVLADWVGRDRGSLTSGYLCR 403
           P ++ G     TR+ + + ++A+CPVL + VG     LT   L R
Sbjct: 351 PVYKPGDKAVATRKLSEIVLDALCPVLPELVG-GSADLTPSNLTR 394


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 721 KQANKKASKFPWGRKIDTSEVVVTCKIRRPVRS 623
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 409 KTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLRKPTANTCQART 555
           +TF HHAN  P++IL    +    R    L    + ++K   N    +T
Sbjct: 13  RTFAHHANLTPRKILHDLPEAAHARKQIPLRPGVILVKKGMTNAWDEKT 61


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 175 RLQVSCYVCGDASHVASGCSM 113
           R  ++CY CG   H A  C+M
Sbjct: 113 RSNMNCYACGSYGHQARDCTM 133


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
 Frame = +3

Query: 327 SRRSARFSRTGWAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTS-LTR 503
           S+ S+ FS T  ++++  S   T + S    P      +++L+SH ++ +   S++ ++ 
Sbjct: 362 SKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSS 421

Query: 504 CYSHTEEANR--EHLSSTHKHALHRKNLHPPAEPEHRRIARH--ERTGRLILQVTTTSDV 671
            + H   ++R   H SS    +L  K +   +       + H  ER+   ++ V T S  
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVTVETVSSG 481

Query: 672 S 674
           S
Sbjct: 482 S 482


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 422  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLSH*GSQPRTLVKHAQART 565
            TM  + ++K     RKL+    HL +  L++H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 163  SCYVCGDASHVASGCSMRFNFCSL 92
            +CY CG A H    C +R  F  L
Sbjct: 1805 TCYKCGKADHNLRECKLRIRFQGL 1828


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 163  SCYVCGDASHVASGCSMRFNFCSL 92
            +CY CG A H    C +R  F  L
Sbjct: 1805 TCYKCGKADHNLRECKLRIRFQGL 1828


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 438 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIA 617
           T T   S    ++ + S S +    H  +  +E   S H+H  HR++     EP    ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163

Query: 618 RHER 629
           RH R
Sbjct: 164 RHHR 167


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 522 EANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGRLILQVTTTSD 668
           E N ++L +  K      +L PP +    R    E+TG L  Q T+TS+
Sbjct: 60  EINDKNLEA-EKDIESNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,593
Number of Sequences: 5004
Number of extensions: 63698
Number of successful extensions: 233
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)