Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P13
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.68
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178... 31 0.89
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 31 1.2
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 29 3.6
03_06_0180 + 32175658-32178145,32178765-32178808 29 3.6
08_02_1539 - 27690412-27690588,27690694-27690834,27691493-276915... 29 4.8
04_04_0452 + 25342306-25342552,25342658-25342785,25342868-253431... 29 4.8
08_02_0707 - 20212190-20214592 29 6.3
05_05_0227 - 23449579-23450459,23450574-23450691 29 6.3
02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784 29 6.3
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 29 6.3
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 28 8.3
02_01_0158 - 1103461-1104186 28 8.3
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 31.9 bits (69), Expect = 0.68
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 516 TEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 638
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +3
Query: 456 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRR 611
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>10_08_0793 -
20614583-20614897,20615417-20615660,20617713-20617899,
20618508-20618547,20618699-20618775,20618965-20619091
Length = 329
Score = 31.5 bits (68), Expect = 0.89
Identities = 27/86 (31%), Positives = 35/86 (40%)
Frame = +3
Query: 429 KLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHR 608
++ T L HH N RC+S ++ A L H H ++ L P E E R
Sbjct: 98 QIWTDMQLQDHHHECN----GPYCRCHSSSKHAKGSLLLLHHHH--QQQQLQRPNEMETR 151
Query: 609 RIARHERTGRLILQVTTTSDVSIFLP 686
R +TG L Q DVS LP
Sbjct: 152 RAEASTQTGFLRSQGICERDVSSGLP 177
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = +3
Query: 327 SRRSARFSRTGWAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRC 506
+RR R TG A+ S PAT + + P +LLT+ TSH + N T S
Sbjct: 671 ARRRERQQLTGSAS----SSPATASAAAASKKP-RLLTSQTTTSHTSTSNATTPRSFDTT 725
Query: 507 YSHTEEANREHL 542
SH + + RE L
Sbjct: 726 SSHQDASFRESL 737
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 279 LQHGLPILEPPRSGCTCARARRLVGDSSXRGLPALACK 166
LQH LPI+ P RS +C+ +R + + G+ +L C+
Sbjct: 222 LQHFLPIMNPVRSESSCSSSRVIAISACFTGM-SLICR 258
>03_06_0180 + 32175658-32178145,32178765-32178808
Length = 843
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 308 RPASVTVEAICPVLADWVGRDRGSLTSGYLCRLTRHFTTMQTS 436
RP SVT+ ++ P L D G ++G GY+ R H S
Sbjct: 345 RPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387
>08_02_1539 -
27690412-27690588,27690694-27690834,27691493-27691588,
27691694-27691786,27691909-27692103,27692340-27692438,
27692527-27692753,27692841-27692973
Length = 386
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = -1
Query: 369 SRPTQSARTGQIASTVTEAGRRVRQTTRPRLQHGLPILEPPRSGC----TCARARRLVGD 202
S + +A Q+AS A T RPR H P+L P GC TC A+ V
Sbjct: 3 SSTSLAALPSQLASPARRAALSRSATARPR-HHHHPLLRAPPKGCRLVVTC-NAQTAVPT 60
Query: 201 SSXRGLP 181
S +G P
Sbjct: 61 SIAQGTP 67
>04_04_0452 +
25342306-25342552,25342658-25342785,25342868-25343110,
25344530-25344782,25344916-25345151
Length = 368
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 527 GFLSVRVTSCKRGGTRKIVVCVVAGKICCGKK-FAWW 420
GF++ +V C +G I +C A +C + +A+W
Sbjct: 291 GFVTAKVACCGQGPYNGIGLCTPASNVCANRDVYAYW 327
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 456 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 623
SHH +++ S + S TE + +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 334 RLDGNGGRPTGPPNDETTPPAR 269
R DG GGRP+ P E T P R
Sbjct: 231 RGDGGGGRPSAPARREGTDPCR 252
>02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784
Length = 1095
Score = 28.7 bits (61), Expect = 6.3
Identities = 26/84 (30%), Positives = 33/84 (39%)
Frame = -2
Query: 779 PALSKWYQ*HYTFDDFGLQQASKQESKQVSVGKKN*HI*SRRDL*DKTSGAFVSGDAXVF 600
P L+KW+ FD ++ V+ G I RD+ D+T G G A V
Sbjct: 359 PGLAKWFY-PGVFDPLAVKAKKLDCLALVAAGVDADKIEGGRDV-DQTIGLVDDGLACVS 416
Query: 599 GFRWRMQVFPVKCVLVRA*QVFAV 528
FRW CV RA V V
Sbjct: 417 AFRWLPGWSTETCVAFRALHVVLV 440
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 643 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRL 527
+R R A R C GSAG R R SA V+ + RL
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRL 69
>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 388 GGETSAVAAHPVRENRADRLDGNGGRPTGPPNDETTP 278
G A +PV + R+ R G+ P GPPN P
Sbjct: 980 GASFGAAGTNPVADKRSGRGKGHSFVPFGPPNGAHKP 1016
>02_01_0158 - 1103461-1104186
Length = 241
Score = 28.3 bits (60), Expect = 8.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 163 SCYVCGDASHVASGC 119
SCY CG+A H+A C
Sbjct: 225 SCYNCGEAGHIARDC 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,979,160
Number of Sequences: 37544
Number of extensions: 519974
Number of successful extensions: 2016
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2015
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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