Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P13
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 35 0.065
U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical pr... 24 4.2
Z99281-17|CAB54456.2| 177|Caenorhabditis elegans Hypothetical p... 29 5.6
U67954-4|AAM54180.1| 345|Caenorhabditis elegans Wrapper/rega-1/... 29 5.6
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 5.6
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 29 5.6
AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobuli... 29 5.6
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 28 7.4
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 28 9.8
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 28 9.8
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 9.8
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 28 9.8
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 35.1 bits (77), Expect = 0.065
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 526 PTANTCQARTSTHFTGKTCIRQRNPNTXASPDTNAPDVLSYR--SRRLQMCQFFFPTETC 699
P+ ++CQ+ S+ T TCIR N+ ++ + + R S+ LQ+C T TC
Sbjct: 90 PSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTGSNSCTNRCNSQCLQICTTPSCTNTC 149
Query: 700 LLSCLLAC 723
SC AC
Sbjct: 150 SNSCSNAC 157
>U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical
protein F41G3.10 protein.
Length = 198
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 379 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTI 477
S L + V +TF L QQ+L TT+T++
Sbjct: 10 SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 529 TANTCQARTSTHFTGKTCIRQRNPNTXASPDT 624
T C +T T TC+ NP T S T
Sbjct: 83 TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114
>Z99281-17|CAB54456.2| 177|Caenorhabditis elegans Hypothetical
protein Y57G11C.33 protein.
Length = 177
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = +3
Query: 324 PSRRSARFSRTGWAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 503
P+R + + R W T V AD++ I P T + +A+Y T ST +
Sbjct: 59 PARLTEKVPRDVWENTI-VRINRIFADAEAITPQTIFETVLGCFTCYASYAITKSTYRRK 117
Query: 504 CYSHTEEANREHLSSTHKHALHRKN 578
E NRE+ H H +N
Sbjct: 118 LDELQEFLNRENREIYHHVGFHIRN 142
>U67954-4|AAM54180.1| 345|Caenorhabditis elegans
Wrapper/rega-1/klingon homologprotein 1, isoform c
protein.
Length = 345
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 439 VRSLHGGKMSCESAQVAGGETSAVAAHPVRENRADRLDGNGGRPTGPP 296
V+ H GK +C + +AG + + + H + +R GRP GPP
Sbjct: 177 VKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQGER----EGRP-GPP 219
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 442 AVRSLHGGKMSCESAQVAGGETSAVA-AHPVRENR--ADRLDGNGGRPTGPPNDETTPP 275
AV GG +CE+ + G A A +P R + A L GN G+P P + TPP
Sbjct: 90 AVHGGGGGGGNCEACCLPGPAGPAGAPGNPGRPGKPGAPGLPGNPGKPPVQPCEPITPP 148
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = -3
Query: 424 GGKMSCESAQVAG-GETSAVAAHPVRENR--ADRLDGNGGRPTGPPNDETTPP 275
GG SC + G S P R R A L GN GRP P TPP
Sbjct: 101 GGGGSCSGCCLPGPAGPSGAPGKPGRPGRPGAGGLPGNPGRPPAQPCHPITPP 153
>AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobulin
domain-containingprotein WRK-1C protein.
Length = 344
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 439 VRSLHGGKMSCESAQVAGGETSAVAAHPVRENRADRLDGNGGRPTGPP 296
V+ H GK +C + +AG + + + H + +R GRP GPP
Sbjct: 176 VKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQGER----EGRP-GPP 218
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +1
Query: 451 LPATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTCIRQRNPNTXASPDT 624
LP TT+ T+ P + + +KPT T T K P T P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 490 PLLHDVTLTLRKPTANTCQARTSTH-----FTGKTCIRQRNPNTXASPDTNAPDVLSYRS 654
P LHDVTL + +AR S T K+ I R P P+ ++PD S S
Sbjct: 1775 PQLHDVTLDKLRDRIEKLEARLSATEKKPVETVKSTIPDR-PEVPEEPEKSSPDRTSRSS 1833
Query: 655 RRLQMCQFFFPTE 693
+L M + TE
Sbjct: 1834 LQLAMEAYGTATE 1846
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 490 PLLHDVTLTLRKPTANTCQARTSTH-----FTGKTCIRQRNPNTXASPDTNAPDVLSYRS 654
P LHDVTL + +AR S T K+ I R P P+ ++PD S S
Sbjct: 1775 PQLHDVTLDKLRDRIEKLEARLSATEKKPVETVKSTIPDR-PEVPEEPEKSSPDRTSRSS 1833
Query: 655 RRLQMCQFFFPTE 693
+L M + TE
Sbjct: 1834 LQLAMEAYGTATE 1846
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 372 AEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 503
A + P T S + PP TA + + NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Frame = +1
Query: 499 HDVTLT--LRKPTANTCQARTSTHFTGKTCIRQRNPNTXASPDTNAPDVLSYRSR----R 660
H T+T L+K A FT KT R + T DV+ + R
Sbjct: 7247 HSTTITDQLQKCQYAFLPAAVFNGFTDKTMSRLESIETLTIGGETVSDVVIETAMKKFPR 7306
Query: 661 LQMCQFFFPTETCLLSCLLAC 723
L+ Q + PTETC+ S C
Sbjct: 7307 LRTIQIYGPTETCIWSLTNKC 7327
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 406 ESAQVAGGETSAVAAHPVRENRADRLDGNGGRPTGPPNDETTPP 275
ES ++A A+AA + E AD +D N P+ PP + PP
Sbjct: 295 ESVEMAKAFDQAIAA--LNECSADEMDMNDVPPSPPPYRKPAPP 336
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 490 PLLHDVTLTLRKPTANTCQARTSTH-----FTGKTCIRQRNPNTXASPDTNAPDVLSYRS 654
P LHDVTL + +AR S T K+ I R P P+ ++PD S S
Sbjct: 1775 PQLHDVTLDKLRDRIEKLEARLSATEKKPVETVKSTIPDR-PEVPEEPEKSSPDRTSRSS 1833
Query: 655 RRLQMCQFFFPTE 693
+L M + TE
Sbjct: 1834 LQLAMEAYGTATE 1846
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,133,038
Number of Sequences: 27780
Number of extensions: 399716
Number of successful extensions: 1344
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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