Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P13
(861 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25840.1 68416.m03219 protein kinase family protein contains ... 31 0.75
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 29 3.0
At2g46740.1 68415.m05832 FAD-binding domain-containing protein s... 29 4.0
At2g04620.1 68415.m00470 cation efflux family protein potential ... 29 4.0
At2g33570.1 68415.m04114 expressed protein 28 7.0
At1g44890.1 68414.m05143 expressed protein 28 7.0
At5g62730.1 68418.m07875 proton-dependent oligopeptide transport... 28 9.2
At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family... 28 9.2
At1g60960.1 68414.m06862 metal transporter, putative (IRT3) iden... 28 9.2
>At3g25840.1 68416.m03219 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 935
Score = 31.5 bits (68), Expect = 0.75
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 450 LTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 629
+ SHH ++ + S+S TE+A++ H HKH HR H + E+ + +
Sbjct: 7 IESHHRKHHRSSSSS-----DDTEKASKRHKHRHHKHHHHRHRHHRDKKRENEIPSAGDE 61
Query: 630 TGRLILQVTTTSDVSI 677
T IL VT + + +
Sbjct: 62 TE--ILDVTPAAPIVV 75
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 160 CYVCGDASHVASGCSMR 110
CY CGD HVA C+ +
Sbjct: 166 CYTCGDVGHVARDCTQK 182
>At2g46740.1 68415.m05832 FAD-binding domain-containing protein
strong similarity to At1g32300, At5g56490, At2g46750,
At2g46760; contains PF01565: FAD binding domain
Length = 590
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 363 PTQSARTGQIASTVTEAGRRVRQTTRPRLQHGLPIL 256
PT A I + T+AGR++R TT R H +P L
Sbjct: 70 PTTEAELVSIVAAATKAGRKMRVTT--RYSHSIPKL 103
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 459 HHANYNFTGSTSLT--RCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERT 632
HH + +G T + +SH E + +H S +HKH H ++ EH H +
Sbjct: 545 HHHAHGGSGCTHSHSHQSHSHKNEEHHQH-SDSHKHEEHHQHSDSHKHEEHHEHDHHHHS 603
>At2g33570.1 68415.m04114 expressed protein
Length = 496
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 423 PCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSST 551
PC +T T T+ ++ NFT + + T S T A + ST
Sbjct: 51 PCSAVTTTTTTTLLSSSNFTSAENFTTSLSTTTAAASQKYDST 93
>At1g44890.1 68414.m05143 expressed protein
Length = 281
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 492 SLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 623
SL RC S N + S++ +H +N EP H+ + H
Sbjct: 2 SLVRCLSLRSVLNPQRYRSSYSFLIHLQNPREEEEPTHKTRSYH 45
>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 589
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -3
Query: 781 VPLYRSGTNNTTRSMTSGSSKQANKK---ASKFPWGRKIDTSEVVVTCKIRRPVRSCLAM 611
VP++ +G+ + SGS K A+ + +K TS +VVTC R +
Sbjct: 245 VPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRRTSRIVVTCHTRNDCDDSVTK 304
Query: 610 RRCSGSAG 587
+ C G G
Sbjct: 305 QNCDGDDG 312
>At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 932
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 360 WAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGST 491
W E++ +C DS D + P L AT + + ANY ST
Sbjct: 279 WVIYGELACNGSCPDSSDEISPIYSLWATFIGLYIANYVVERST 322
>At1g60960.1 68414.m06862 metal transporter, putative (IRT3)
identical to putative metal transporter IRT3
[Arabidopsis thaliana] gi|17385796|gb|AAL38438; similar
to iron-regulated transporter 1 [Lycopersicon
esculentum] gi|9716481|gb|AAF97509; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 425
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 519 EEANREHLSSTHKHALHRKNLHPP 590
E++ H+ H HA H ++ HPP
Sbjct: 204 EDSGGIHIVGIHAHAAHHRHSHPP 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,140,400
Number of Sequences: 28952
Number of extensions: 368228
Number of successful extensions: 1210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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