Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P12
(871 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73359-1|CAA97728.1| 334|Homo sapiens 92M18.1 (breast cancer 2,... 31 5.4
X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein. 31 5.4
X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for ... 31 5.4
U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein. 31 5.4
M14058-1|AAA51851.1| 705|Homo sapiens C1R protein. 31 5.4
BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1,... 31 5.4
AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early ... 31 5.4
AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early ... 31 5.4
AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early ... 31 5.4
AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of compl... 31 5.4
>Z73359-1|CAA97728.1| 334|Homo sapiens 92M18.1 (breast cancer 2,
early onset (breast cancer type 2 susceptibility prot
protein.
Length = 334
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -3
Query: 806 PVIPXCNFXGTSWLKLFILKGSIGRAFAVPMRTEHLDQASFCPFAP-REVSVLAELALGH 630
PV P C F + K F S G + P++ + L+ PF E+S+L ++
Sbjct: 198 PVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNSPQMTPFKKFNEISLLESNSIAD 257
Query: 629 LRYSLTDVPPQSNSSPG 579
+L + + S G
Sbjct: 258 EELALINTQALLSGSTG 274
>X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein.
Length = 3418
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -3
Query: 806 PVIPXCNFXGTSWLKLFILKGSIGRAFAVPMRTEHLDQASFCPFAP-REVSVLAELALGH 630
PV P C F + K F S G + P++ + L+ PF E+S+L ++
Sbjct: 3282 PVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNSPQMTPFKKFNEISLLESNSIAD 3341
Query: 629 LRYSLTDVPPQSNSSPG 579
+L + + S G
Sbjct: 3342 EELALINTQALLSGSTG 3358
>X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for
complement component C1r. ).
Length = 705
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 233 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 343
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein.
Length = 3418
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -3
Query: 806 PVIPXCNFXGTSWLKLFILKGSIGRAFAVPMRTEHLDQASFCPFAP-REVSVLAELALGH 630
PV P C F + K F S G + P++ + L+ PF E+S+L ++
Sbjct: 3282 PVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNSPQMTPFKKFNEISLLESNSIAD 3341
Query: 629 LRYSLTDVPPQSNSSPG 579
+L + + S G
Sbjct: 3342 EELALINTQALLSGSTG 3358
>M14058-1|AAA51851.1| 705|Homo sapiens C1R protein.
Length = 705
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 233 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 343
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1, r
subcomponent protein.
Length = 705
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 233 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 343
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early onset
protein.
Length = 3418
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -3
Query: 806 PVIPXCNFXGTSWLKLFILKGSIGRAFAVPMRTEHLDQASFCPFAP-REVSVLAELALGH 630
PV P C F + K F S G + P++ + L+ PF E+S+L ++
Sbjct: 3282 PVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNSPQMTPFKKFNEISLLESNSIAD 3341
Query: 629 LRYSLTDVPPQSNSSPG 579
+L + + S G
Sbjct: 3342 EELALINTQALLSGSTG 3358
>AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early onset
protein.
Length = 3418
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -3
Query: 806 PVIPXCNFXGTSWLKLFILKGSIGRAFAVPMRTEHLDQASFCPFAP-REVSVLAELALGH 630
PV P C F + K F S G + P++ + L+ PF E+S+L ++
Sbjct: 3282 PVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNSPQMTPFKKFNEISLLESNSIAD 3341
Query: 629 LRYSLTDVPPQSNSSPG 579
+L + + S G
Sbjct: 3342 EELALINTQALLSGSTG 3358
>AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early onset
protein.
Length = 3418
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -3
Query: 806 PVIPXCNFXGTSWLKLFILKGSIGRAFAVPMRTEHLDQASFCPFAP-REVSVLAELALGH 630
PV P C F + K F S G + P++ + L+ PF E+S+L ++
Sbjct: 3282 PVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNSPQMTPFKKFNEISLLESNSIAD 3341
Query: 629 LRYSLTDVPPQSNSSPG 579
+L + + S G
Sbjct: 3342 EELALINTQALLSGSTG 3358
>AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of
complement component 1 protein.
Length = 705
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 233 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 343
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,054,117
Number of Sequences: 237096
Number of extensions: 2809847
Number of successful extensions: 5986
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5983
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -