Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P10
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    28   1.5  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   3.6  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    26   8.2  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   8.2  

>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 642 IVHPSKGNVSWDXTVVRQVSLPY 710
           I+HP   ++SWD  + R++ +PY
Sbjct: 451 IMHPWFRDISWDKILTRKIEVPY 473


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 349 YLCQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 483
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 358 DRGTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 209
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -2

Query: 489 GSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTEV-PPQSNSPPGS 319
           GS G  F+   RT  LD +        + V++L   ++ + + Y+L ++ PP +  PP S
Sbjct: 129 GSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAKPPAS 188

Query: 318 VLE 310
           V+E
Sbjct: 189 VIE 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,135
Number of Sequences: 5004
Number of extensions: 68351
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)