Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P09
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 169 3e-43
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 155 1e-38
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 66 5e-12
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 32 0.12
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 31 0.22
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.5
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 4.7
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 26 8.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 8.2
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 169 bits (412), Expect = 3e-43
Identities = 84/198 (42%), Positives = 127/198 (64%)
Frame = +1
Query: 19 IHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKI 198
+ Q +P ++ +I +++L A++K N +A + FL K+ DV YF ++
Sbjct: 39 VEEEQGFSTPCLTHEGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKEL 98
Query: 199 SEENIKNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQ 378
EE+I++NFVL+YELLDEI+DFG PQ ++T +L+ +ITQ S + ++ A +T
Sbjct: 99 QEESIRDNFVLVYELLDEIMDFGFPQTTETKILQEYITQT---SNTVKKHAPPPIAMTNA 155
Query: 379 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGIND 558
I WR EGI YR+NE+FLDV+E VNL+ + G V+ + + GKV +K YLSGMPE + G+ND
Sbjct: 156 ISWRSEGIHYRKNEVFLDVIESVNLIAAADGTVIQSEILGKVRLKCYLSGMPELRLGLND 215
Query: 559 KIVMEAKGKGNGGISGNT 612
K++ EA G+ I GNT
Sbjct: 216 KVLFEAAGR---TIKGNT 230
Score = 55.2 bits (127), Expect = 1e-08
Identities = 21/37 (56%), Positives = 30/37 (81%)
Frame = +2
Query: 647 VVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRY 757
V ++D +FHQCV+L +FE + +ISFIPPDG+F+ M Y
Sbjct: 231 VEMEDVKFHQCVRLARFENDRTISFIPPDGEFDLMSY 267
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 155 bits (375), Expect = 1e-38
Identities = 74/209 (35%), Positives = 129/209 (61%), Gaps = 10/209 (4%)
Frame = +1
Query: 40 RSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKN 219
R P+ +I +++ + K ++++ A+TK N N +V EFL +I + YFGK++E +K+
Sbjct: 43 RHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKD 102
Query: 220 NFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGIK------SASKEEQAQI----TSQV 369
N I+ELLDE++D+G Q ++ L ++ +K S + +Q+ +S++
Sbjct: 103 NVSFIFELLDEMIDYGIIQTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEI 162
Query: 370 TGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFG 549
G + WRR GIKYR+N +++D++E +NLL+S G VL + V+G V M++ LSGMPEC+FG
Sbjct: 163 PGSVPWRRAGIKYRKNSIYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQFG 222
Query: 550 INDKIVMEAKGKGNGGISGNTDSDPARSG 636
+NDK+ + K + S N+ + + +G
Sbjct: 223 LNDKLDFKLKQSESKSKSNNSRNPSSVNG 251
Score = 64.1 bits (149), Expect = 3e-11
Identities = 25/43 (58%), Positives = 34/43 (79%)
Frame = +2
Query: 647 VVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRYPTPKXI 775
V+++DCQFHQCV+L +FE EH I+FIPPDG+ E M Y + + I
Sbjct: 254 VILEDCQFHQCVRLPEFENEHRITFIPPDGEVELMSYRSHENI 296
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 66.5 bits (155), Expect = 5e-12
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Frame = +1
Query: 94 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGHP 273
++ L T + + + + +I+DV++++FG + ++ N +I +LL E++D+G+
Sbjct: 66 DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYA 125
Query: 274 QNSDTGVLKTFITQQGIKS---ASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEY 444
+ L+ + + A Q + + WR KY NE F+ VLE
Sbjct: 126 TCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFIHVLER 185
Query: 445 VNLLMSPQGQVLSAHVAGKVVMKSYLSGMP 534
V+ + P G++ V + K +SGMP
Sbjct: 186 VSAVYQPNGKLAFGTVKSDMECKCQISGMP 215
Score = 34.7 bits (76), Expect = 0.018
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 638 KPVVVIDDCQFHQCVKLXKFETE-HSISFIPPDGKFEXMRYPT 763
+P + + +FHQ V L +++ I FIPPDGKF + T
Sbjct: 222 RPGTKLGNVRFHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQT 264
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 31.9 bits (69), Expect = 0.12
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +1
Query: 91 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 258
A ++ N + E + ++++ S+FG + E ++ NF + +LDEI+
Sbjct: 64 AGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEII 119
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 256 RSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIPWPRSHFAL 116
RS AT +S++S S + S T S+ ++ TQ+ WP +H L
Sbjct: 727 RSQNATSQSQESGS--EIGSSIAGTAGSYNVGTSNTQLSWPSTHSTL 771
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = +1
Query: 79 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 216
+I+ N + + +++ + A++ E +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 637 PQSEPDHCPCYPICLHFPFPWLPSRF 560
P+S +C + + FPF +LP+RF
Sbjct: 411 PESPAAYCALRFVLVAFPFDYLPARF 436
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +1
Query: 172 VMQSYFGKISEENIKNNFVLIYELLDEILDFG 267
V++++ G+I+++ ++ V+IY + D L FG
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFG 144
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 178 QSYFGKISEENIKNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQ 318
+ + KI EE +K N +L YE D +S ++KTF Q
Sbjct: 952 KDFVTKIEEETLKENPLLFYEYRKASSDMRVLMDSQFLMMKTFARLQ 998
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,671,600
Number of Sequences: 5004
Number of extensions: 77589
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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