Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P09
(882 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44) 332 2e-91
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20) 163 1e-40
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 3e-18
SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43) 46 4e-05
SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05) 29 6.6
SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
Length = 331
Score = 332 bits (816), Expect = 2e-91
Identities = 153/207 (73%), Positives = 183/207 (88%)
Frame = +1
Query: 16 LIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGK 195
+IHAR Q+RSPVTNIARTSFFHI++ N+W+AAVT+QNVNAAMVFEFL + +D+M SYFGK
Sbjct: 36 VIHARGQIRSPVTNIARTSFFHIRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGK 95
Query: 196 ISEENIKNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTG 375
++EE IKNNFVLIYELLDEI D+G+PQ +DT +LKTFITQQG+K+ ++EEQAQITSQVTG
Sbjct: 96 VTEEGIKNNFVLIYELLDEIADYGYPQKTDTAILKTFITQQGVKTQTREEQAQITSQVTG 155
Query: 376 QIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGIN 555
QIGWRR+GIKYRRNELFLDVLE VNLLMSPQGQVLSAHV+G+VVMKS+LSGMPECKFG+N
Sbjct: 156 QIGWRRDGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSFLSGMPECKFGMN 215
Query: 556 DKIVMEAKGKGNGGISGNTDSDPARSG 636
DK+V+E + K + S +T D G
Sbjct: 216 DKLVVEKQSKSS---SSDTSVDTTIGG 239
>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
Length = 216
Score = 163 bits (397), Expect = 1e-40
Identities = 74/162 (45%), Positives = 114/162 (70%)
Frame = +1
Query: 103 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGHPQNS 282
+ TK+N N A++F FL +++ V YF ++ EE+I++NFV+IYEL+DE++DFG+PQ +
Sbjct: 12 VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQFT 71
Query: 283 DTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMS 462
+T +L+ +ITQ+G K E + +T + WR + IKYR+NE+FLDV+E VNL++S
Sbjct: 72 ETKILQEYITQEGHKL---ELAPKPPPALTNAVSWRGDNIKYRKNEVFLDVIESVNLMVS 128
Query: 463 PQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKG 588
G VL + + G V M+ YL+GMPE + G+NDKI+ E G+G
Sbjct: 129 SSGNVLRSEINGTVKMRCYLTGMPELRLGLNDKILFENTGRG 170
Score = 56.8 bits (131), Expect = 2e-08
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +2
Query: 647 VVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRY 757
V ++D +FHQCV+L +FE + +ISFIPPDG+FE M Y
Sbjct: 175 VELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSY 211
>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 89.8 bits (213), Expect = 3e-18
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Frame = +1
Query: 163 IIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKSASKE 342
+ ++ + Y G I+EE IK N LIYELLDE+LDFG+ Q + T LK ++ Q E
Sbjct: 18 VCNLCKDYCGIINEEAIKCNLPLIYELLDEVLDFGYVQATSTEALKAYVFNQ---PELVE 74
Query: 343 EQAQITSQVT-GQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSY 519
Q Q + G + +R K +NE+F+D+LE + +L+SP G +L + + G + MKS+
Sbjct: 75 NSGQSVWQCSGGNVIFR----KSHKNEIFVDLLERLTVLISPNGSILRSDIDGCIQMKSF 130
Query: 520 LSGMPECKFGINDKIVM 570
L+G P+ + + + + +
Sbjct: 131 LTGSPDVRIALTEDLTV 147
Score = 44.8 bits (101), Expect = 9e-05
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 647 VVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRY 757
V + DC FH+ V L +FE+ ++S +PPDG+F M Y
Sbjct: 161 VKLADCNFHKSVNLDEFESSRTLSVLPPDGEFTVMSY 197
>SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)
Length = 822
Score = 46.0 bits (104), Expect = 4e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 385 WRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKI 564
+R GI YR++E+F+DV + + L+ G V +V ++++++G PEC+ +ND +
Sbjct: 491 YRDRGITYRKDEVFVDVDDTCHALLDGTGNVKKLGGRVQVKIRAFVTGDPECQLVLNDIV 550
Query: 565 VME 573
V E
Sbjct: 551 VKE 553
Score = 36.7 bits (81), Expect = 0.025
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 653 IDDCQFHQCVKLXKFETEHSISFIPPDG-KFEXMRY 757
+ CQFH+CV + F HSI F P D FE +R+
Sbjct: 574 LQHCQFHKCVDVSAFNESHSIVFHPLDACTFELLRF 609
>SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)
Length = 788
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 435 TRVCQLVDVTARSSALCSRGWESGHEVISVRDARVQVWD 551
T + L+ +TA S L S+ + H + S D +++WD
Sbjct: 517 TSMEDLIGITADGSLLLSKSRDGNHFISSSNDKLLRIWD 555
>SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 214 KNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGI 324
K V I +LL+E+LD G P ++ VLK I I
Sbjct: 121 KKGAVYILQLLEEMLDNGFPLATEPNVLKELIRPPSI 157
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 629 RAGSLSVLPDMPPFPFPLASITILSLIPNLHSGIPDRYDFMTTFPAT*AEST*PC 465
+ G LS+LP P L ++P+LH G+ D+ F+ F T PC
Sbjct: 663 KKGELSILPSSVTLLAPC-----LHMLPHLHFGLKDKTRFVMPFSLTALSLGLPC 712
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,611,542
Number of Sequences: 59808
Number of extensions: 623446
Number of successful extensions: 1777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1770
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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