Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P09
         (882 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            26   1.3  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.3  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    24   5.3  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   7.1  

>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 436 LEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECK-FGIND 558
           LE V  L+ P G  +      ++ ++ Y     ECK FG++D
Sbjct: 402 LELVRALVEPAGGSIELEECERIFVRLYADYPAECKEFGLSD 443


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 439 EYVNLLMSPQGQVLSAHVAGKVV 507
           EY+N+++ P G   SA VAG V+
Sbjct: 30  EYLNIILGPNGTGKSAIVAGIVL 52


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 295 LKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFL-DVLE--YVNLLMSP 465
           L + +T+    + +  +Q Q  + V G   WR    KY R  + L   +E  Y +++ +P
Sbjct: 227 LGSMMTENKASTFNMNKQQQRLTGVHGGCPWRPPNFKYGRGIIGLHQEIEQFYAHMIATP 286

Query: 466 QGQVLSAHVAGKV 504
               L   V  ++
Sbjct: 287 TEHALRVMVVSRI 299


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 471  SSALCSRGWESGHEVISVRDARVQVW 548
            SS  C+R  ++G  +I + + RV VW
Sbjct: 1630 SSNSCNRPPKAGEVLIFITELRVSVW 1655


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 956,712
Number of Sequences: 2352
Number of extensions: 21054
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 94680279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)