Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P09
(882 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 192 3e-49
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 192 3e-49
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 173 1e-43
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 173 1e-43
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 124 1e-28
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 124 1e-28
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 98 8e-21
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 44 1e-04
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 42 4e-04
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam... 29 3.1
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 7.2
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 28 7.2
At3g03090.1 68416.m00305 sugar transporter family protein simila... 28 7.2
At1g65440.1 68414.m07424 glycine-rich protein 28 7.2
At1g31670.1 68414.m03888 copper amine oxidase, putative similar ... 28 7.2
At4g04850.1 68417.m00707 K+ efflux antiporter, putative (KEA3) s... 28 9.5
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 28 9.5
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 192 bits (468), Expect = 3e-49
Identities = 95/207 (45%), Positives = 139/207 (67%), Gaps = 8/207 (3%)
Frame = +1
Query: 16 LIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG- 192
++ ++ PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG
Sbjct: 39 IMQTKELGNCPVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGG 98
Query: 193 KISEENIKNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKS--ASKEEQAQI--- 357
E+ I+NNFVLIYELLDEI+DFG+PQN +LK +ITQ+G++S +SK + +
Sbjct: 99 AFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNA 158
Query: 358 TSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPE 537
T QVTG +GWRREG+ Y++NE+FLD++E VNLLMS +G VL V GKV+MK +LSGMP+
Sbjct: 159 TLQVTGAVGWRREGLAYKKNEVFLDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLSGMPD 218
Query: 538 CKFGINDKIVMEAKG--KGNGGISGNT 612
K G+NDKI +E + K SG T
Sbjct: 219 LKLGLNDKIGLEKESEMKSRPAKSGKT 245
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +2
Query: 623 RLALGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRY 757
R A + +DD FHQCV L +F +E ++SF+PPDG+FE M+Y
Sbjct: 238 RPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKY 282
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 192 bits (468), Expect = 3e-49
Identities = 95/207 (45%), Positives = 139/207 (67%), Gaps = 8/207 (3%)
Frame = +1
Query: 16 LIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG- 192
++ ++ PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG
Sbjct: 39 IMQTKELGNCPVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGG 98
Query: 193 KISEENIKNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKS--ASKEEQAQI--- 357
E+ I+NNFVLIYELLDEI+DFG+PQN +LK +ITQ+G++S +SK + +
Sbjct: 99 AFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNA 158
Query: 358 TSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPE 537
T QVTG +GWRREG+ Y++NE+FLD++E VNLLMS +G VL V GKV+MK +LSGMP+
Sbjct: 159 TLQVTGAVGWRREGLAYKKNEVFLDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLSGMPD 218
Query: 538 CKFGINDKIVMEAKG--KGNGGISGNT 612
K G+NDKI +E + K SG T
Sbjct: 219 LKLGLNDKIGLEKESEMKSRPAKSGKT 245
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +2
Query: 623 RLALGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRY 757
R A + +DD FHQCV L +F +E ++SF+PPDG+FE M+Y
Sbjct: 238 RPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKY 282
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 173 bits (421), Expect = 1e-43
Identities = 74/188 (39%), Positives = 127/188 (67%)
Frame = +1
Query: 34 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 213
Q PV ++ ++ +N++L ++QN NAA + FL +++DV + YF ++ EE++
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 214 KNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRR 393
++NFV++YELLDE++DFG+PQ ++ +L FI + E + VT + WR
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQYTEARILSEFIKTDAYRM---EVTQRPPMAVTNAVSWRS 163
Query: 394 EGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 573
EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YL+GMPECK G+ND++++E
Sbjct: 164 EGIQYKKNEVFLDVIENVNILVNSNGQIVRSDVVGALKMRTYLTGMPECKLGLNDRVLLE 223
Query: 574 AKGKGNGG 597
A+G+ G
Sbjct: 224 AQGRATKG 231
Score = 54.8 bits (126), Expect = 7e-08
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +2
Query: 623 RLALGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRY 757
R GK + ++D +FHQCV+L +FE + +ISFIPPDG F+ M Y
Sbjct: 227 RATKGK-AIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTY 270
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 173 bits (421), Expect = 1e-43
Identities = 76/188 (40%), Positives = 127/188 (67%)
Frame = +1
Query: 34 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 213
Q PV ++ ++ +NI+L ++QN NAA + FL +++DV + YF ++ EE++
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 214 KNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRR 393
++NFV++YELLDE++DFG+PQ ++ +L FI + E + VT + WR
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRM---EVTQRPPMAVTNSVSWRS 163
Query: 394 EGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVME 573
EG+K+++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E
Sbjct: 164 EGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLE 223
Query: 574 AKGKGNGG 597
A+G+ G
Sbjct: 224 AQGRAIKG 231
Score = 54.8 bits (126), Expect = 7e-08
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +2
Query: 629 ALGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRY 757
A+ + ++D +FHQCV+L +FE + +ISFIPPDG F+ M Y
Sbjct: 228 AIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTY 270
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 124 bits (298), Expect = 1e-28
Identities = 62/192 (32%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Frame = +1
Query: 46 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 225
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 226 VLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIK 405
VL+YELLDE++DFG+ Q + T VLK++I + I + Q + + Q R G
Sbjct: 110 VLVYELLDEVIDFGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTA 169
Query: 406 Y------------RRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFG 549
RR E+F+D++E +++ S G +L++ + G + MKSYLSG PE +
Sbjct: 170 VTKSVVANDPGGRRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLA 229
Query: 550 INDKIVMEAKGK 585
+N+ + + G+
Sbjct: 230 LNEDLNIGRGGR 241
Score = 51.6 bits (118), Expect = 7e-07
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = +2
Query: 647 VVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRY 757
V++DDC FH+ V+L F+++ ++S +PPDG+F M Y
Sbjct: 254 VILDDCNFHESVRLDSFDSDRTLSLVPPDGEFPVMNY 290
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 124 bits (298), Expect = 1e-28
Identities = 62/192 (32%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Frame = +1
Query: 46 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 225
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 226 VLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIK 405
VL+YELLDE++DFG+ Q + T VLK++I + I + Q + + Q R G
Sbjct: 110 VLVYELLDEVIDFGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTA 169
Query: 406 Y------------RRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFG 549
RR E+F+D++E +++ S G +L++ + G + MKSYLSG PE +
Sbjct: 170 VTKSVVANDPGGRRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLA 229
Query: 550 INDKIVMEAKGK 585
+N+ + + G+
Sbjct: 230 LNEDLNIGRGGR 241
Score = 51.6 bits (118), Expect = 7e-07
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = +2
Query: 647 VVIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRY 757
V++DDC FH+ V+L F+++ ++S +PPDG+F M Y
Sbjct: 254 VILDDCNFHESVRLDSFDSDRTLSLVPPDGEFPVMNY 290
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 97.9 bits (233), Expect = 8e-21
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 8/199 (4%)
Frame = +1
Query: 1 YWE*MLIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQ 180
+W+ + PV F I R I A ++ + M EFL ++ DV+
Sbjct: 33 FWDQYISQGDSFKALPVIASPTHYLFQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLS 92
Query: 181 SYFGKISEENIKNNFVLIYELLDEILDFGHPQNSDTGVLKTFITQQGIKSASKEEQAQIT 360
Y G ++E+ IK+NF+++YELLDE++D G P ++ +LK I + S
Sbjct: 93 EYLGGLNEDLIKDNFIIVYELLDEMIDNGFPLTTEPSILKEMIAPPNLVSKMLSVVTGNA 152
Query: 361 SQVTGQ--------IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKS 516
S V+ + WR KY NE+++D++E ++ +++ G+++ + G+V M S
Sbjct: 153 SNVSDTLPSGAGSCVPWRPTDPKYSSNEVYVDLVEEMDAIVNRDGELVKCEIYGEVQMNS 212
Query: 517 YLSGMPECKFGINDKIVME 573
L+G P+ + ++E
Sbjct: 213 QLTGFPDLTLSFANPSILE 231
Score = 46.0 bits (104), Expect = 3e-05
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 650 VIDDCQFHQCVKLXKFETEHSISFIPPDGKFEXMRYPTPK 769
+++D +FH CV+ +E+ +SF+PPDG+F+ M Y K
Sbjct: 229 ILEDMRFHPCVRYRPWESHQVLSFVPPDGEFKLMSYRVKK 268
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 91 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGH 270
A+++ Q N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 271 PQNSDTGVLKTFIT-QQGIKSASKEEQAQITS 363
Q S + I+ Q + +KEE + I++
Sbjct: 123 LQESSKKTVARIISAQDQLVEVAKEEASSISN 154
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 91 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGH 270
A+++ + N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 271 PQNSDTGVLKTFIT-QQGIKSASKEEQAQITS 363
Q S + I+ Q + +KEE + I++
Sbjct: 123 LQESSKKTVARIISAQDQLVEVAKEEASSISN 154
>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 784
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +1
Query: 334 SKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMK 513
SK++ + + G + +G+ Y + L++L ++N+L V GK ++
Sbjct: 278 SKKKLSHAEKMIKGALTELFKGLNYLKTYRNLNILAFMNILKKFD------KVTGKQILP 331
Query: 514 SYLSGMPECKFGINDKIVM 570
YL + F I+DK+++
Sbjct: 332 IYLKVVESSYFNISDKVMI 350
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 379 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPE 537
+ W + I NE +VL Y+ L+S Q+L A V K V++ L+ + E
Sbjct: 589 VNWTSDDIPQGGNEYMNEVLIYLETLVSTAQQILPAKVL-KRVLRDVLAHISE 640
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 482 LLTWLGKWS*SHICPGCQSA 541
L TW G W +C GC++A
Sbjct: 187 LCTWCGTWKGDKLCSGCKNA 206
>At3g03090.1 68416.m00305 sugar transporter family protein similar
to xylose permease [Bacillus megaterium] GI:1924928;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 503
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 683 SRTGGTDSRQ*PLLASPERAGSLSVLPDMPPFPFP 579
S +GG + + PLL + SVL +PPF FP
Sbjct: 20 SSSGGITAEKEPLLKENHSPENYSVLAAIPPFLFP 54
>At1g65440.1 68414.m07424 glycine-rich protein
Length = 1647
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -1
Query: 240 LIDQNKVILDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDRCQPNICTL 85
++D + +LDVL+ R ++ND Q++ RV + D QP++ L
Sbjct: 734 MLDSSGEVLDVLYAGSLTSRSQNVNDQQRKKSDQDRVLKFMMDH-QPHVVAL 784
>At1g31670.1 68414.m03888 copper amine oxidase, putative similar to
amine oxidase [copper-containing] precursor [Pisum
sativum] SWISS-PROT:Q43077
Length = 741
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -2
Query: 701 FRTXSASRTGGTDSRQ*PLLASPERAGSLSVLPDMPPFPF-PLASITILSLIPNLHSGIP 525
FR + G + P+ +S GSLS +P PP PF PL I L+L+ N+ I
Sbjct: 72 FRPTGQGPSQGIGHKDPPVFSSVFVIGSLSFIP--PPHPFDPLTEIE-LNLVRNI---IN 125
Query: 524 DRY 516
+RY
Sbjct: 126 ERY 128
>At4g04850.1 68417.m00707 K+ efflux antiporter, putative (KEA3)
similar to A. thaliana K+ antiporter KEA1, GenBank
accession number AF003382; Monovalent cation:proton
antiporter family 2 (CPA2 family) member, PMID:11500563
Length = 488
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 430 DVLEYVNLL-MSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKG 588
DV E + ++ GQVL+ ++ +V S L G P F +N +V E++ G
Sbjct: 373 DVSESIVIIGFGQMGQVLANFLSTPLVSDSDLVGWPYIGFDLNPAVVKESRKLG 426
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 461 DINKLTYSSTSRNSSFRLYLMPSRR 387
D N+ YS R SS++L++MPSRR
Sbjct: 6 DRNQGGYSLGVRCSSYKLFIMPSRR 30
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,943,430
Number of Sequences: 28952
Number of extensions: 441858
Number of successful extensions: 1197
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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