Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P08
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.16 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.84 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   1.1  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.4  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.4  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    27   4.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.5  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   6.0  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   7.9  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   7.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 540 SPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSISVSHPLV 719
           S  IS +ST   N  FH PT    TS S     A   GV +    S+ +  + SV+    
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAY 860

Query: 720 T 722
           T
Sbjct: 861 T 861


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 532  SHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPL-SSEAPS 699
            S PP+R +   P      +   PP +  P PS P  P     AP   PPL +S APS
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP--PPPLPASSAPS 1742


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
 Frame = +2

Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 458 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
                V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
 Frame = +2

Query: 290 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 463
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 464 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
              V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 448
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 449 DVTVEGVNVLATPSSS 496
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 406
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 260  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 537 PSPAISATSTRSSN---PRFHTPTTPD 608
           P P+IS T+T SS       H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 14   YSLEEIVPLXVSAASAIPSLVNA-FSSSKPPQTDNPSARS 130
            Y ++  +P     A A  S  NA FSSS PPQ  N S  S
Sbjct: 1593 YGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 14   YSLEEIVPLXVSAASAIPSLVNA-FSSSKPPQTDNPSARS 130
            Y ++  +P     A A  S  NA FSSS PPQ  N S  S
Sbjct: 1593 YGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 546 AISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASV 680
           A+   ++ S    F  PTT    S+SI+P  +        V+A V
Sbjct: 69  AVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADV 113


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 23/63 (36%), Positives = 29/63 (46%)
 Frame = +1

Query: 565 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKXGF 744
           P    P S  +PP +  P PSIP  P     +P   PP+ S+AP     PSSL       
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP-PP-----SPASAPPIPSKAPP---IPSSLPPPAQPA 178

Query: 745 APL 753
           AP+
Sbjct: 179 APV 181


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 341 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 706 LTPSSLGMAKXGFAPLFQVNDESQASRLIXRHSTHXP 816
           L   SLG     FA  ++  D+ + SR+I   +TH P
Sbjct: 384 LAHGSLGKLFSEFARFYENFDDLEQSRIIFEKATHVP 420


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 510 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 376
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 101 GVWKKRKH*PRREWPKRQKRXKAQF 27
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,271
Number of Sequences: 5004
Number of extensions: 64761
Number of successful extensions: 265
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)