Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P08
(858 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.69
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 32 0.69
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3) 29 3.7
SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5) 29 3.7
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 29 3.7
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43) 29 4.8
SB_30122| Best HMM Match : YadA (HMM E-Value=2) 29 4.8
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0) 29 4.8
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) 29 4.8
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88) 29 6.4
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_20390| Best HMM Match : LRR_1 (HMM E-Value=0.34) 28 8.5
>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 31.9 bits (69), Expect = 0.69
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Frame = +1
Query: 475 AGHPFILSHYYWRSRPYASSH------PPLRSRLHQPDHQIPDSIHQPPQT*H-PFPSIP 633
+ HP + H+ +S P+ SSH PP + LH+PD+ + HQ T P +
Sbjct: 289 SAHPSQVPHH--KSEPHTSSHKPQLWVPPTQQSLHKPDNPHKNPYHQSSITQQAPKAAEL 346
Query: 634 *TPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKXGFAPLFQVNDESQASRLIXRHSTHX 813
+ +P +PP PSA L G P Q ++ + +TH
Sbjct: 347 KAAHPPSHSPQTQPP--DRQPSASLPAQYQGQQPYAQGP--QPQQSQHMAQNVSYPATHQ 402
Query: 814 PXPSS 828
SS
Sbjct: 403 HYQSS 407
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 31.9 bits (69), Expect = 0.69
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 415 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLR 549
T + LL YC R AGHPF+L Y + R Y +S PLR
Sbjct: 91 TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLR 137
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 31.5 bits (68), Expect = 0.91
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +1
Query: 517 RPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAP 696
+PY + PP+ S +Q +P + P P P +P + Y + PG+ P +S P
Sbjct: 905 QPYNTPMPPISSTPYQAPPTLPPTTLTTPSWSQPVP-VP-SMYQPQ-PPGIMQPPTSIPP 961
Query: 697 SAYLTPSSLGMAKXGFAP 750
S + P S + G P
Sbjct: 962 SQPMAPPSFPPSSMGGFP 979
>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
Length = 474
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -3
Query: 457 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 278
C + P + W+F + G K DS + + + G V +HS VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334
Query: 277 KIE 269
+ E
Sbjct: 335 EEE 337
>SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)
Length = 168
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +1
Query: 463 RSQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQP---DHQIPDSIHQPPQT*HPFPSIP 633
+S C HP Y +P SHP R +QP +H I ++QP HP +IP
Sbjct: 31 QSSCINHPVSTILY----QPSCISHPVSTIR-YQPSRINHPISTILYQPSHINHPVSTIP 85
Query: 634 *TP 642
P
Sbjct: 86 YQP 88
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 594 PTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSI--SVSHPLVTG 725
PT+P++TS S P ++AG + VV+ ++ SV P++ G
Sbjct: 1911 PTSPEMTSRSGQPFKRFTKHIKAGDRLRVVMGSTVLKSVLQPVIQG 1956
>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
Length = 1803
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = -3
Query: 592 VWNRGFDDRVDVAEIAGEG----GLMHKGE-TANSNARG*RGGQHIDSFNCD---VSSSP 437
+W++ +DVAE+AG G GL + TA S G HID F C +S P
Sbjct: 1545 LWHKDTAGHIDVAEVAGGGATNEGLKKRAAYTAQSVEVGLIVNLHIDIFKCGRYLLSGVP 1604
Query: 436 TKVNCD 419
K+ +
Sbjct: 1605 MKIRLE 1610
>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
Length = 408
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 395 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 505
S P K+P+T T+A+VT +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275
>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1433
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +2
Query: 269 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 376
F +TG E KS+S+T++ +P V ++ +G D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522
>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
Length = 808
Score = 29.1 bits (62), Expect = 4.8
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Frame = +2
Query: 293 KSNSVTVQSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEG 466
+++ VT Q P+ S + GY D N+ PS S I V ++ W T
Sbjct: 207 EAHIVTEQEAPSCSPEDLAVGYSDGKAHNITWSPIPSNQSNGIIVVYEITWVKVANTTRS 266
Query: 467 VNVLATPSSSRITIGGLALMHQATLPCDLGYINP---IIKSPIPYTNHPRLN 613
L SS+ + L LPC + I+ I P P+T LN
Sbjct: 267 RRALDAASSANTSSTSYRLTD--LLPCSVYNISVRGYTIAGPGPFTRPLSLN 316
>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
Length = 841
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 461 EGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIH 619
E V + +PS+S +TI G +L + P G +P + S P N P IH
Sbjct: 560 EVVTTIGSPSTSGVTITGTSLRGDSQAPAVSGSQSPPLTSSTPPMN-PSNPIH 611
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 537 PSPAISATSTRSSNPRFHTPTTPDLTS 617
P+PA + T T+ + P HTPTTP T+
Sbjct: 94 PTPATTPTPTKPT-PTAHTPTTPTPTA 119
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/71 (30%), Positives = 26/71 (36%)
Frame = +1
Query: 514 SRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEA 693
S P S P S H P S P T PS+P TP P++
Sbjct: 662 STPSTPSTPSTPSLTHTPSTPSTPSTPSTPST----PSMPNTPSTPSTPSTPSTPITPGT 717
Query: 694 PSAYLTPSSLG 726
PS TPS+ G
Sbjct: 718 PSTPSTPSAPG 728
>SB_20390| Best HMM Match : LRR_1 (HMM E-Value=0.34)
Length = 108
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +2
Query: 413 IPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPY 592
+P + LC + +++E + A PS +I GG +L+ Q G++ + S +PY
Sbjct: 18 LPYELVLCGSLQIMSIENCPLSALPS--QIVAGGPSLVIQ-------GFVFHVSCSWLPY 68
Query: 593 TNHPRLNIHFHQ 628
++ PR I+F +
Sbjct: 69 SSEPRHAINFRE 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,894,006
Number of Sequences: 59808
Number of extensions: 520742
Number of successful extensions: 1735
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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