Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P06
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 51 2e-07
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 49 1e-06
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 47 4e-06
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.84
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 28 2.0
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 27 4.5
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 27 4.5
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 6.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 6.0
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 6.0
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 26 6.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.9
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 51.2 bits (117), Expect = 2e-07
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 278 LPDGWDYARDFDGKLYFIDHNNRKTTWIDPRDRYTKPQTFADCIGN 415
LP GW+ G+ YF+DHN R TTW+DPR+ +P + +G+
Sbjct: 308 LPFGWEMRYTDTGRPYFVDHNTRTTTWVDPRNPLVRPNGGSSTVGS 353
Score = 46.4 bits (105), Expect = 5e-06
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 275 PLPDGWDYARDFDGKLYFIDHNNRKTTWIDPR 370
PLP GW+ ++YF+DHN + TTW DPR
Sbjct: 365 PLPSGWEMRLTNSARVYFVDHNTKTTTWDDPR 396
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 278 LPDGWDYARDFDGKLYFIDHNNRKTTWIDP 367
LP GW+ D G+ Y++DHN R TTW P
Sbjct: 238 LPPGWERRADSLGRTYYVDHNTRTTTWTRP 267
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 48.8 bits (111), Expect = 1e-06
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +2
Query: 266 GEMPLPDGWDYARDFDGKLYFIDHNNRKTTWIDPR 370
G LP GW+ +G+ YF+DHN R TTW+DPR
Sbjct: 286 GSGELPPGWEQRYTPEGRPYFVDHNTRTTTWVDPR 320
Score = 46.0 bits (104), Expect = 7e-06
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 275 PLPDGWDYARDFDGKLYFIDHNNRKTTWIDPR 370
PLP GW+ ++YF+DHN + TTW DPR
Sbjct: 346 PLPSGWEMRLTNTARVYFVDHNTKTTTWDDPR 377
Score = 44.0 bits (99), Expect = 3e-05
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 278 LPDGWDYARDFDGKLYFIDHNNRKTTWIDP 367
LP GW+ D G+ Y++DHN R TTWI P
Sbjct: 207 LPPGWERRTDNLGRTYYVDHNTRSTTWIRP 236
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 435 EEAYDPQIGPYYINHVNQVTQLEDPR 512
E+ Y P+ PY+++H + T DPR
Sbjct: 295 EQRYTPEGRPYFVDHNTRTTTWVDPR 320
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 46.8 bits (106), Expect = 4e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +2
Query: 275 PLPDGWDYARDFDGKLYFIDHNNRKTTWIDPRD 373
PLP GW+ D +YF+DH+ + TTW DPRD
Sbjct: 243 PLPAGWEMRLSEDYHVYFVDHSTKTTTWSDPRD 275
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 582 PREPPALCGGSPSASPPEHSAILASGLLAGSP 487
P PP+L G+P+A P SA +A L AG P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 355 RRFSVVMIDEIKFSVKVPCIIPSVGQGHLTVSSPWHISLIKSIQT 221
+RF V+IDE +++ C IP +G + ++ H+ L ++Q+
Sbjct: 381 QRFDAVIIDEASQALEPQCWIPLLGMNKVILAGD-HMQLSPNVQS 424
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 151 RGISQWRRRVPTMECGAYARANTRSGSVRHSND 53
+GI+ W+R+ EC R N+ S +H D
Sbjct: 170 KGITTWKRKCRLRECSNPTRPNSNYCSDKHGVD 202
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 461 PDLRIVGLLPSQAAIHCQCSPRTFVALCICLA 366
PDL GL+ ++ IH +P+TFV++C LA
Sbjct: 118 PDLLETGLIYAKT-IHIITNPKTFVSVCEELA 148
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 468 SRARSEDRRPPPQPSGNSLPMQSANVCGFVYLSR 367
S ARS P S NS+P+ S N+ F + R
Sbjct: 358 STARSSTLSQNPSSSSNSIPLISRNLRDFSFFKR 391
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 224 LNGFNQ*NMPRRRNGEMPLPDGWDYARDF 310
LNG N+ NMP +NG +PL D+ ++
Sbjct: 534 LNGINESNMPMLQNG-LPLRTSGDHPSNY 561
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +3
Query: 474 NHVNQVTQLEDPRLEWLSVQEAMLRDYLHTAQEALEAKKEMYDIKKQRLCLAQDEYKHLN 653
N +Q+ + R++ LS +A+L + H +E +A+KE+ ++ Q+ +
Sbjct: 416 NEKSQIAVPSEIRVQ-LSTLDAILLQFEHLRKELTQARKEIQILRHTSQNGDQESNESSK 474
Query: 654 NALST 668
NA++T
Sbjct: 475 NAITT 479
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 354 RGSTRETDTQSHKRSRTALAMN 419
R TRETD+ +H+ +RT L N
Sbjct: 62 RPITRETDSSAHQETRTRLEEN 83
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -2
Query: 582 PREPPALCGGSPSASPPEHSAILASG 505
P PP + G P PP A+ A G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGG 789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,071
Number of Sequences: 5004
Number of extensions: 68342
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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