Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P06
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 39 0.004
12_01_0794 + 7285100-7285369,7285931-7286338 32 0.67
03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033... 31 1.2
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 31 1.6
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 31 1.6
11_03_0142 + 10675764-10675991,10676533-10676943 30 2.1
04_04_0795 - 28111155-28111649,28111747-28112405,28112499-281126... 30 2.1
02_03_0411 - 18739279-18739902,18741471-18741671 30 2.7
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 29 3.6
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 29 4.7
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 6.3
02_05_1085 + 33989863-33991179 29 6.3
09_03_0208 + 13500051-13500434,13501392-13501532,13501631-135019... 28 8.3
08_02_0352 + 16146025-16146642 28 8.3
08_01_0405 - 3597236-3597549,3598333-3598402 28 8.3
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 263 NGEMP--LPDGWDYARD-FDGKLYFIDHNNRKTTWIDP 367
NG P LP GW+ D GK ++IDHN R TTW P
Sbjct: 519 NGRNPRTLPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 31.9 bits (69), Expect = 0.67
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 275 PLPDGWDYARDFD-GKLYFIDHNNRKTTWIDPRDR 376
PLP W+ D G++Y+++ K +WI P+++
Sbjct: 78 PLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRPKEQ 112
>03_06_0524 -
34502286-34502609,34502998-34503084,34503280-34503360,
34503962-34504114,34504898-34504954,34505050-34505296,
34505412-34505527,34506074-34506225,34506713-34506902,
34506976-34507169,34507256-34507388
Length = 577
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +2
Query: 491 DPARRPEARMAECSGGDAEGLPPHSAGGSRG--*ERDVRYKETKALPSSR*I*TPQQCSV 664
DP + P + M + + EGLP GG G VRY ETK LP S P+
Sbjct: 147 DPMKIPRSIMEQWNPQIVEGLPDAFCGGWVGFFSYDTVRYVETKKLPFSN---APEDDRN 203
Query: 665 HPSLPQELXVSVFXFNHEFCRIXVGXPWVP*EC 763
P + L + F+H + V WV +C
Sbjct: 204 LPDIHLGLYNDIVVFDHVEKKTHV-IHWVRVDC 235
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 519 ILASGLLAGSPD*RD*CSRARSEDRRPPPQPSGNSLPMQSA 397
+ A+ LLA +P R C RAR PPP+P G +P+ ++
Sbjct: 128 LTATSLLAATPGHRRDCHRAR-----PPPRPGGRLVPVAAS 163
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 471 CSRARSEDRRPPPQPSGNSLPMQSANVC 388
CSR R RRPPP P + P + + C
Sbjct: 334 CSRRRGRSRRPPPLPLSSFFPARRSARC 361
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 30.3 bits (65), Expect = 2.1
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 275 PLPDGWDYARDF-DGKLYFIDHNNRKTTWIDPRDRY 379
PLP W+ D G++Y+++ + +W+ P + +
Sbjct: 64 PLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRPMEEH 99
>04_04_0795 -
28111155-28111649,28111747-28112405,28112499-28112635,
28112747-28113093
Length = 545
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 468 YINHVNQVTQLEDPRLEWLSVQEAMLRDYLHTAQEALEA 584
Y+ V Q+T+L DPR WL + E+ + + A +L +
Sbjct: 60 YLGEVGQMTRLADPRDAWLPITESRSGNAYYAAFHSLSS 98
>02_03_0411 - 18739279-18739902,18741471-18741671
Length = 274
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 263 NGEMPLPDGWDYARDF-DGKLYFIDHNNRKTTWIDPR 370
N E+ LP W+ D G++Y+I+ + T IDPR
Sbjct: 51 NSEVALPYHWEQCLDIRTGQVYYINWEDGTRTTIDPR 87
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 290 WDYARDFDGKLYFIDHNNRKTTWIDP-RDRYTKP 388
W+YA+ DGK Y ++N +WID D Y P
Sbjct: 334 WEYAKSMDGKPY--GYHNMIFSWIDTISDNYPPP 365
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 492 TQLEDPR--LEWLSVQEAMLRDYLHTAQEALEAKKEMYDIKKQR 617
T+L+D + L+ ++ +E+ LR + + ++ LEA KE +D KQ+
Sbjct: 375 TELDDAKEMLQKVAEEESSLRSLVESLKQELEAVKEEHDQLKQK 418
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +2
Query: 428 GWGGGLRSSDRALLH*SRQSGDPARRPEARMAECSGGDAEGLPPHSAGGSRG 583
G GG R D A R G P R GG G PP+ GG G
Sbjct: 26 GGGGRGRGRDGAPYSGGRGRGQDGSYPGGRGGGYGGGGGGGGPPYYGGGGGG 77
>02_05_1085 + 33989863-33991179
Length = 438
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 284 DGWDYARDFDGKLYFIDHNNRKTTWIDPRDRYTKPQTFADCIGNELPLGWGGGLRSSD 457
DG D RDFDG + FI+ ++ +I P + Y Q D ++ P + L SD
Sbjct: 228 DGLDETRDFDGHILFIEEDH----YIFP-NAYRNAQLLVDLKPSKCPQCYAINLAPSD 280
>09_03_0208 +
13500051-13500434,13501392-13501532,13501631-13501996,
13502450-13502692,13502951-13503043,13503459-13503659,
13503809-13504021
Length = 546
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 290 WDYARDFDGKLYFIDHNNRKTTWIDP-RDRYTKP 388
WDYAR GK Y ++N +WID D Y P
Sbjct: 342 WDYARSMVGKPY--GYHNMIFSWIDTIGDNYPPP 373
>08_02_0352 + 16146025-16146642
Length = 205
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 428 GWGGGLRSSDRALLH*SRQSGDPARRPEARMAECSGGDAEGL 553
G GGG+R S L R++G + P A SGGD G+
Sbjct: 76 GGGGGVRQSVGEALAAGRRAGRGSTSPNLVEAGSSGGDGGGV 117
>08_01_0405 - 3597236-3597549,3598333-3598402
Length = 127
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 301 CIIPSVGQGHLTVSSPWHISLIKSIQTSNEAHSRTSYTAMLNTSLRGVTSRGISQWRRRV 122
C PSVG G +SPW + ++ S + + S A T LR + +S R
Sbjct: 64 CSRPSVGDGAPAHTSPWLLIVVASDREGAGSSQGASDPAAFITGLRAAATSRLSAPPRPS 123
Query: 121 P 119
P
Sbjct: 124 P 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,515,015
Number of Sequences: 37544
Number of extensions: 552108
Number of successful extensions: 1993
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1986
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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