Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P06
(859 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 9e-17
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31) 41 0.001
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 33 0.22
SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_26679| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-10) 30 2.8
SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37) 30 2.8
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 29 3.7
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44) 29 4.8
SB_54437| Best HMM Match : DUF226 (HMM E-Value=2) 29 6.4
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 29 6.4
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 9.4
>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1668
Score = 84.6 bits (200), Expect = 9e-17
Identities = 34/58 (58%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = +2
Query: 248 MPRRRNGEMPLPDGWDYARDF-DGKLYFIDHNNRKTTWIDPRDRYTKPQTFADCIGNE 418
MP+ + E+PLP GW+ ARD DG++Y+IDH + +TTWIDPRDR KP +F+DC+GNE
Sbjct: 1 MPKEKPCEVPLPVGWEEARDTRDGRVYYIDHYSHRTTWIDPRDRLMKPLSFSDCVGNE 58
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/60 (43%), Positives = 42/60 (70%)
Frame = +3
Query: 483 NQVTQLEDPRLEWLSVQEAMLRDYLHTAQEALEAKKEMYDIKKQRLCLAQDEYKHLNNAL 662
N+ Q EDPR++W QE ML++YL AQ + K++ ++KKQRL +AQ+E+++L + L
Sbjct: 57 NETQQTEDPRIQWRQQQEDMLKEYLSLAQSEINEKEDFLNVKKQRLNVAQEEFQYLTSQL 116
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 64.1 bits (149), Expect = 1e-10
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Frame = +2
Query: 74 TASCVRSRVRAAFHRGDPSPPLADPA*RHTS**GIQHGRVASSRVCFVTRLNGFNQ*NMP 253
+ + + S V H G P PP+ PA ++ + GR +S+ LNG +MP
Sbjct: 221 SGALLESGVFEGNHYGTPKPPI-QPAGTLSAPASKRQGRPSSATKWKKGPLNG----DMP 275
Query: 254 RRRNGEM--PLPDGWDYARDFDGKLYFIDHNNRKTTWIDPRDRYTKPQTFADCIGNELPL 427
+G+M PLPD W+ A + YFIDH T W+DPR K + DC +ELP
Sbjct: 276 ---SGDMLGPLPDNWEVAYTETNEKYFIDHKTGTTQWVDPRLASKKSRRPEDCDDDELPY 332
Query: 428 GW 433
GW
Sbjct: 333 GW 334
Score = 36.3 bits (80), Expect = 0.032
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 435 EEAYDPQIGPYYINHVNQVTQLEDPRL 515
E+ DP+ G YYI+H+N+ TQ E+P L
Sbjct: 335 EKVDDPKYGTYYIDHINKKTQFENPVL 361
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 278 LPDGWDYARDFDGKLYFIDHNNRKTTWIDP 367
LP GW+ D Y+IDH N+KT + +P
Sbjct: 330 LPYGWEKVDDPKYGTYYIDHINKKTQFENP 359
>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 257 RRNGEM-PLPDGWDYARDFDGKLYFIDHNNRKTTWIDPRDRYTKPQTFADCIGNELPLGW 433
R NG + PLP GW+ + +G++YF++HN R T W DPR T+ AD LP GW
Sbjct: 484 RDNGPLGPLPAGWEKRVETNGRVYFVNHNTRTTQWEDPR---TQTTASAD---KPLPQGW 537
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 197 SSRVCFVTRLNGFNQ*NMPRRR---NGEMPLPDGWDYARDFDGKLYFIDHNNRKTTWIDP 367
+ RV FV Q PR + + + PLP GW+ +G YF+DHN R TT+ DP
Sbjct: 503 NGRVYFVNHNTRTTQWEDPRTQTTASADKPLPQGWEMRYTNEGIPYFVDHNTRTTTFTDP 562
Query: 368 R 370
R
Sbjct: 563 R 563
Score = 45.2 bits (102), Expect = 7e-05
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 269 EMPLPDGWDYARDFDGKLYFIDHNNRKTTWIDPR 370
E PLP GW+ D G++Y++DHN+R T W P+
Sbjct: 380 EEPLPPGWEQRVDPHGRIYYVDHNSRTTAWERPQ 413
Score = 44.8 bits (101), Expect = 9e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 275 PLPDGWDYARDFDGKLYFIDHNNRKTTWIDP 367
PLP GW+ D G+ Y++DHN R TTW P
Sbjct: 414 PLPHGWERRTDSRGRTYYVDHNTRTTTWQRP 444
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +2
Query: 248 MPRRRNGEMPLPDGWDYARDFD-GKLYFIDHNNRKTTWIDPRDRYTKPQTF 397
MP++++ PLP+GW+ D + G+ +FIDHN R TTW DPR P +F
Sbjct: 1 MPQQQH---PLPNGWEMTVDPNSGRPFFIDHNTRTTTWTDPRTNKQTPVSF 48
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 49.2 bits (112), Expect = 4e-06
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +2
Query: 269 EMPLPDGWDYARDFDGKLYFIDHNNRKTTWIDPR 370
+M L GWD D +G+LYFIDHN R TT+IDPR
Sbjct: 1706 QMELFPGWDKKVDQNGRLYFIDHNTRTTTFIDPR 1739
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 47.6 bits (108), Expect = 1e-05
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 275 PLPDGWDYARDFDGKLYFIDHNNRKTTWIDPRDRYT 382
PLP+GW+ +D +G+ ++IDH R TTW+ P T
Sbjct: 183 PLPEGWEERQDANGRTFYIDHTTRTTTWVRPSSEST 218
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 549 PSASPPEHSAILASGLLAGSPD*RD*CSRARSEDRRPPPQPSG 421
PSA PE + +L L PD + + ARS +PPP P G
Sbjct: 149 PSAPTPEGTPVLVQSL----PDVEEPSASARSSAEQPPPLPEG 187
>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
Length = 368
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 293 DYARDFDGKLYFIDHNNRKTTWIDPR 370
DY + G+LYFIDHN R TT+IDPR
Sbjct: 237 DYEQKKMGELYFIDHNTRTTTFIDPR 262
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 33.5 bits (73), Expect = 0.22
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 278 LPDGWDYARD-FDGKLYFIDHNNRKTTWIDPRDRYT 382
LP GW+ A D G++++ DHN + T W P+ T
Sbjct: 489 LPHGWEKAVDQTTGRIFYRDHNTQTTHWNPPQTTQT 524
>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/120 (20%), Positives = 54/120 (45%)
Frame = +3
Query: 333 IITTEKRRGSTRETDTQSHKRSRTALAMNCRLAGEEAYDPQIGPYYINHVNQVTQLEDPR 512
I T + + S +E D S + + ++ EE P+ + H + ++ ++ +
Sbjct: 302 ITITLRPQKSEKEVDASSERAPKDNKVRKSKIKTEELKVPKALEREVGHA-KTSKKDESK 360
Query: 513 LEWLSVQEAMLRDYLHTAQEALEAKKEMYDIKKQRLCLAQDEYKHLNNALSTPRCLKNXS 692
E ++ + + R L E ++EM+ ++KQ L L + LN+++ + K+ S
Sbjct: 361 EECGTIDDCVERKKLPIDSSLAELRREMHSLRKQDLEL-MSQLLALNSSIQNFKLEKSTS 419
>SB_26679| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-10)
Length = 366
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 142 SQWRRRVPTMECGAYARANTRSGSVRHSNDN 50
SQ RR +CG++ R GSV H N+N
Sbjct: 322 SQVRRLCGCYQCGSHMHGLDREGSVEHDNNN 352
>SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)
Length = 93
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 516 EWLSVQEAMLRDYLHTAQEALEAKKEMYDIKKQRLCLAQ---DEYK 644
EW Q A+ R Y A + EMYDIK +RL L + D+YK
Sbjct: 12 EWYDPQAALTRKY-QLLFYASDNSVEMYDIKNRRLFLKRSKCDQYK 56
>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 492 TQLEDPRLEWLSVQEAMLRDYLHTAQEALEAKKEMYDIKKQRLCLAQDE 638
T L P+ +WLS + + Q++ E+KK M+ KK++ L +++
Sbjct: 278 TSLSYPQKDWLSKKPKNQDIHTRYKQQSFESKKNMFHSKKEQKQLLENQ 326
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 278 LPDGWDYARDFDGKLYFIDHNNRKTTWIDP 367
LP W A D GK+Y+ R+T W P
Sbjct: 848 LPPNWKTATDPQGKIYYYHTLTRRTQWDPP 877
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 510 RLEWLSVQEAMLRDYLHTAQEALEAKKEMYDIKKQRLCLAQDEYKHLNNALSTPRCLKN 686
R+ L Q A + L QE E + YD +KQRL L +D K + + + + N
Sbjct: 364 RISELQNQLAKNKSKLSETQERCEKLEIRYDEEKQRLSLVEDTIKTITQSKERVKMMVN 422
>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
Length = 667
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 444 RPPPQPSGNSLPMQSANVCGFVYLS 370
+PPPQP+G+ +++CGF+ LS
Sbjct: 452 QPPPQPTGDLKCNFDSDLCGFLQLS 476
>SB_54437| Best HMM Match : DUF226 (HMM E-Value=2)
Length = 364
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 369 ETDTQSHKRSRTALAMNCRLAGEEAYDPQIGPYYINHVNQVTQLEDPRLEW-LSVQEAML 545
+++ Q KR NC L + + ++ Y+ + +++ED RL W L E +
Sbjct: 99 QSENQKTKRGPGFWKFNCSLLKDPEFKAKMRAYFSTTSEKYSEVEDERLFWDLMKMEIAI 158
Query: 546 RDYLHTAQEALEAKKEMYDIKKQ 614
+ ++A + + E + K+
Sbjct: 159 FTKQFSEEKAAKLRNEELTLLKE 181
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 290 WDYARDFDGKLYFIDHNNRKTTWIDPRDRYTKPQTFA 400
W R DG++YF + ++TW P++ Q A
Sbjct: 419 WSEHRTSDGRVYFYNSRTMQSTWERPKEMDQSQQPMA 455
>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 435 EEAYDPQIGPYYINHVNQVTQLEDP 509
E+ PQ G YY+NH +Q E P
Sbjct: 369 EQVESPQYGIYYVNHATGSSQREHP 393
>SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 260 RNGEMPLPDGWDYARDFDGKLYFIDHNNRKTTWIDPR 370
++ + LP W+ G++Y+ + N +TT+ DPR
Sbjct: 25 QDSDEELPVEWEVRTTDTGRVYYANTVNHQTTFTDPR 61
>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 23.8 bits (49), Expect(2) = 9.4
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Frame = +3
Query: 363 TRETDTQSHKRSRT--ALAMNCRLAGEEAYDPQIGPYYINHVNQV-----TQLEDPRLEW 521
T +T Q+H ++R A CR A A D ++ TQ EDPRL+
Sbjct: 173 TLKTHLQTHMQTRYKHACRRTCRHARRHATDTHADTLQRRMQTRMQKTRSTQWEDPRLQL 232
Query: 522 LSVQEAMLRDYLHTAQE 572
+ + R LH E
Sbjct: 233 NTTSQVHTRFSLHVDVE 249
Score = 22.6 bits (46), Expect(2) = 9.4
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +3
Query: 549 DYLHTAQEALEAKKEMYDIKKQRLCLAQDEYKHLNNALSTPRCLKNXS*VYFXSIT 716
DY + + Y+I +R L +D Y+ + ++ P LK+ + F T
Sbjct: 266 DYFRSKLKRPSNVPNKYEIHIRRRNLMEDSYRAVQLSIVKPEILKSRLWIVFDGET 321
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,990,961
Number of Sequences: 59808
Number of extensions: 568497
Number of successful extensions: 3439
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3406
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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