Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P06
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 413 CQCSPRTFVALCICL 369
           C+ SP + +A+C+C+
Sbjct: 93  CELSPNSTIAVCVCM 107


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 409 NAVRERLWLCVSVSRVDPRRFSVVMIDEIKFSVKVP 302
           NAVR  L L     RV+  + +V  +DE++F  + P
Sbjct: 550 NAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRP 585


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 112 ECGAYARANTRSGS 71
           ECG Y   NT+ GS
Sbjct: 374 ECGKYPNGNTKVGS 387


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 85  TRSGSVRHSNDNKNANDRTTRAR 17
           T S S++H +DN + +  T   R
Sbjct: 219 TNSNSIKHESDNSDYSHTTDENR 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,039
Number of Sequences: 438
Number of extensions: 5266
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)