Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P06
(859 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59770.1 68416.m06670 sacI homology domain-containing protein... 42 5e-04
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 31 1.3
At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP... 30 1.7
At5g57380.1 68418.m07169 fibronectin type III domain-containing ... 29 5.2
At4g27360.1 68417.m03927 dynein light chain, putative similar to... 28 6.9
At4g27020.1 68417.m03886 expressed protein gene F20P5.12 of BAC ... 28 6.9
At1g02390.1 68414.m00185 phospholipid/glycerol acyltransferase f... 28 6.9
At4g10190.1 68417.m01670 F-box family protein-related contains T... 28 9.1
At4g09870.1 68417.m01616 F-box family protein contains Pfam PF00... 28 9.1
At4g00315.1 68417.m00040 F-box family protein contains F-box dom... 28 9.1
At3g52600.1 68416.m05794 beta-fructosidase, putative / beta-fruc... 28 9.1
>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
WW domain-containing protein contains Pfam profiles
PF00397: WW domain, PF02383: SacI homology domain;
identical to cDNA SAC domain protein 9 (SAC9)
GI:31415734
Length = 1630
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 275 PLPDGWDYARD-FDGKLYFIDHNNRKTTWIDP 367
PLP GW+ D GK Y+IDHN + TTW P
Sbjct: 509 PLPPGWEKRADAVTGKSYYIDHNTKTTTWSHP 540
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 435 EEAYDPQIGPYYINHVNQVTQLEDPRLEWLS 527
++ Y + G YYI+ N +T++E +WLS
Sbjct: 478 QDGYTARFGVYYIDFKNNLTRMEKESAKWLS 508
>At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP2)
identical to RAN GTPase activating protein 2 GI:6708468
from [Arabidopsis thaliana]
Length = 545
Score = 30.3 bits (65), Expect = 1.7
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Frame = +3
Query: 282 PTDGIMQGTLTENFISSIITTEKRRGSTRETDTQSHKRSRTALAMNCRLAGEEAYDPQIG 461
PT + +T NF S I TEK T++ T++ KR E D G
Sbjct: 22 PTRKALIERITNNFSSKTIFTEKYGSLTKDQATENAKRIEDIAFSTANQQFEREPDGDGG 81
Query: 462 PYYINHVNQVTQLEDPRLEWLSVQEAMLRDYLHTAQEALEAKKEMYDIKK-QRLCLAQDE 638
+ + ++L L+ V + R+ + +++++ ++ +DI K +R + +E
Sbjct: 82 SAVQLYAKECSKLILEVLKKGPVAKVAARELI--SEDSVSPRETFFDISKGKRAFIEAEE 139
Query: 639 YKHLNNALSTP 671
+ L L P
Sbjct: 140 AEELLKPLKEP 150
>At5g57380.1 68418.m07169 fibronectin type III domain-containing
protein / PHD finger protein-related contains Pfam
profiles PF00041: Fibronectin type III domain, PF00628:
PHD-finger
Length = 600
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 229 WI*SVKYAKETKR*DALARRMGLCKGL*RKTLFHRS 336
W VK AKET+R D L R+ L + L R T +R+
Sbjct: 193 WRKQVKVAKETRRVDVLCYRLSLGQKLLRGTTKYRN 228
>At4g27360.1 68417.m03927 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 103
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 657 HC*GVYIHLELGKAFVSLYRTSLS*PREPPALC 559
HC G +IH +G + L++ S+ P PP C
Sbjct: 70 HCSGCFIHFSVGSLTILLFKGSVGEP-APPDRC 101
>At4g27020.1 68417.m03886 expressed protein gene F20P5.12 of BAC
F20P5 from Arabidopsis thalianachromosome 1,
PID:g2194125
Length = 523
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 290 WDYARDFDGKLYFIDHNNRKTTWID 364
W+YAR DGK Y ++N +WID
Sbjct: 318 WEYARSMDGKPY--GYHNLIFSWID 340
>At1g02390.1 68414.m00185 phospholipid/glycerol acyltransferase
family protein contains Pfam profile PF01553:
Acyltransferase
Length = 530
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 308 FDGKLYFIDHNNRKTTWIDPRDRYTKPQTFAD 403
F ++YF+ ++++K+ P+D+Y KP F D
Sbjct: 231 FCQEIYFVRNSDKKSWQTLPQDQYPKPLIFHD 262
>At4g10190.1 68417.m01670 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 353
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 284 DGWDYARDFDGKLYFIDHNNRKTTWIDPRDRYTKPQTFA 400
DG+ D +L + +R T WI PR+ Y K FA
Sbjct: 96 DGFLLCTTVDNRLVVSNPCSRDTKWIQPRNFYKKFDIFA 134
>At4g09870.1 68417.m01616 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; hypothetical protein
T25N22.10 -Arabidopsis thaliana, PID:g3805763
Length = 337
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 423 RLAGEEAYDPQIGPYYINHVNQVTQLEDPR 512
+L E+++ P++ PY +V + Q+E PR
Sbjct: 301 QLRFEQSFCPKMDPYVFGYVPSLVQIEQPR 330
>At4g00315.1 68417.m00040 F-box family protein contains F-box domain
Pfam:PF00646
Length = 441
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 273 CPCPTDGIMQGTLTENFISSIITTEKRRG-STRETDTQS 386
CPC DGIM T + ++ +T E++ S E+D+ S
Sbjct: 215 CPCHLDGIMMNTPSLKYLK--VTDERQESDSDNESDSDS 251
>At3g52600.1 68416.m05794 beta-fructosidase, putative /
beta-fructofuranosidase, putative similar to
beta-fructofuranosidase [Daucus carota] GI:18324
Length = 590
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 281 PDGWD-----YARDFDGKLYFIDHNNRKTTW 358
PDGWD Y + K +F D NR+ W
Sbjct: 301 PDGWDGLRFDYGNYYASKTFFDDKTNRRILW 331
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,815,317
Number of Sequences: 28952
Number of extensions: 392285
Number of successful extensions: 1075
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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