Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P04
(873 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 44 2e-04
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 44 2e-04
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 43 3e-04
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 41 0.001
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 40 0.004
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 38 0.011
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 38 0.011
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 38 0.014
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.033
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 36 0.033
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.057
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.100
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 32 0.70
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 32 0.70
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 32 0.70
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.2
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 2.1
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 30 2.1
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 2.1
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043) 29 5.0
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06) 28 8.7
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Frame = +1
Query: 139 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 303
++ LL Y +++ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 304 WNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTGRGTTLS 420
WN ++G + ++ +R+W+PDV+L N A+T R +L+
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLRFGSLN 134
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +1
Query: 139 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 303
+++ L Y +++ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 304 WNAGEW-GCSTWLVSSERLWRPDVVLLN 384
WN ++ G + +++ +++W+PDV+L N
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +1
Query: 151 LLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 315
L TY+++ P D + V L L L ++ + T+ ++ ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 316 EW-GCSTWLVSSERLWRPDVVLLNAA 390
+ G ++ + RLW PD+ L N A
Sbjct: 80 AYDGVDNIVIKASRLWLPDITLYNNA 105
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 277 MNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 390
+ W++ LSWNA E+G +T V +RLW PD+VL N A
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYNNA 115
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 205 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL 381
LTL+ H ++E ++ L+ W D RL+WN E+ G + S+ +W PD+ +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 382 NAA 390
N+A
Sbjct: 81 NSA 83
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 250 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLNAAATTGRG 408
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN A + G
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMG 86
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 256 RILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 387
+++ + + W + LSWNA E+ G S VS +R W PD++L N+
Sbjct: 16 KLIRIIAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 37.9 bits (84), Expect = 0.011
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 250 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 384
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 37.9 bits (84), Expect = 0.011
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 271 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTGRGTTLS 420
L+M W D L WN ++G T + + + +W P V++ N A G T S
Sbjct: 547 LRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYNQAGDLGESITSS 597
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 37.9 bits (84), Expect = 0.011
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 283 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTGRGT 411
W + LSWNA E+G S + ++LW+PD+ L N A ++ G+
Sbjct: 119 WKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGS 162
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +1
Query: 115 ENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQM 279
++ L L+ D Y++ P D + V + + + + + ++L ++M
Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86
Query: 280 NWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 384
NW + L WNA E+G L +S +W PD+VL N
Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 36.3 bits (80), Expect = 0.033
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 214 HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 390
HLR + V + ++ W + L+WN ++ G + ++ ++W PD++L N A
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 391 ATTGRG 408
T G
Sbjct: 166 DETYAG 171
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 36.3 bits (80), Expect = 0.033
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 271 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 390
+ + W D RL WN ++G +++ S +LW PD+ L N A
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYNNA 316
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 35.5 bits (78), Expect = 0.057
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 271 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTGRGTTL 417
+++ W D L+WN ++G + V +W+PD++L N A+T R +L
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPASTDLRVESL 75
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 34.7 bits (76), Expect = 0.100
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 223 HANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATT 399
H + + TV L W D L+WN ++ G + V +W PD+VL N +
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYNNVDSD 258
Query: 400 GRG 408
G
Sbjct: 259 SSG 261
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 31.9 bits (69), Expect = 0.70
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 274 QMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTGRG 408
+ W D L W+ + G T + V LW+PD+VL N RG
Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYNNVNDEDRG 133
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 31.9 bits (69), Expect = 0.70
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 190 KIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRP 366
K +V LH + A + S S VR+ +++ W + L WN ++G T V+ +W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 367 DVVLLN 384
D+VL N
Sbjct: 127 DIVLYN 132
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 271 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 390
+ + W + L+W+ +G T + V R+WRPD++L N A
Sbjct: 75 IDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYNNA 115
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +1
Query: 271 LQMNWIDKRLSWNAG-EWGCSTWLVSSERLWRPDVVLLNAAATTGRGTTL 417
+ W D L WN G V +W PD+ L+N GT L
Sbjct: 28 IYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMNKKRKRALGTKL 77
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 31.9 bits (69), Expect = 0.70
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Frame = +1
Query: 46 MSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 225
M+ + LLPFL S E+ +++ L Y++E+ P V+N + +
Sbjct: 1 MAPLLLSLLPFLFVFPSLSVDHTEDVEHR--LLNDLFKDYNKEARP----VLNKSEAI-- 52
Query: 226 ANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVL 378
E + + + + W++ L+W+ +G T + V+ +W+PD+VL
Sbjct: 53 ----EVQFDMAYAQLINLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVL 100
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 139 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 312
+++ LL YDR P + V +TL L T+ + D+ W + L+WN
Sbjct: 15 LLEKLLTGYDRNERPVLNDNESVTVTLGL----------TLNQIVDVI--WYNPLLTWNV 62
Query: 313 GEWG-CSTWLVSSERLWRPDVVL 378
E+G T VS +W PD+VL
Sbjct: 63 TEYGGLKTINVSPTIIWLPDIVL 85
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 271 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 390
+ + W + ++WN E+G + + LW+PD+ L N A
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYNNA 84
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 283 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 384
W ++ L+W+ E+G ST V+ +++W PD+ L N
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYN 36
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 253 VRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTGRG 408
+ I+ + + W ++ L+W+ + G T + ++ +W PD+VL ++A + G
Sbjct: 39 MEIVQIVNVRWDNELLTWHPSNYEGVQTVRLDAKSVWIPDIVLYDSADSVFSG 91
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 283 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 384
W D L W+ ++ S + +W PDV L+N
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLIN 437
>SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +1
Query: 163 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 327
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 328 STWLVSSERLWRPDVVLLNAAA 393
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)
Length = 137
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +1
Query: 163 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 327
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 328 STWLVSSERLWRPDVVLLNAAA 393
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 240 LTNVSMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 136
L+++S +G VD FGV + +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/59 (28%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Frame = -3
Query: 865 PPPXXPAXXRXXXXXXXXXXXGXXXXGXG-GGAXPPXXXXXXXXPPPPRXGXXXXXXPP 692
PPP G G G GG PP PPPP G PP
Sbjct: 503 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPP 561
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -3
Query: 865 PPPXXPAXXRXXXXXXXXXXXGXXXXGXGGGAXPPXXXXXXXXPPPPRXGXXXXXXPPP 689
PPP G G G G PP PPPP G PPP
Sbjct: 536 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPP--GAGQEGPPPP 592
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 262 LADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 384
+ DLQ W + L+W+ ++G + V+ E +W PD+V+ N
Sbjct: 1467 IVDLQ--WENPILTWDPRDYGGVQEINVAPEEVWVPDIVIYN 1506
>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
Length = 229
Score = 28.3 bits (60), Expect = 8.7
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = +1
Query: 118 NATSLSLMIDSLLATYDRESPPD-SKIVVNLTLHLRHANIRE-SESTVRILAD--LQMNW 285
NA +LS+ I+ LA+YDR+ P+ + V + + + + E E+ + D L+ W
Sbjct: 15 NAHNLSVFINDALASYDRKVRPNYGGLPVMVLIEFKVISFGEIQEANMEYSFDIFLRQWW 74
Query: 286 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 384
D R N E + ++ W PD N
Sbjct: 75 YDPRFKSNFTE-PFTMAADPTKMFWTPDTYFWN 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,135,638
Number of Sequences: 59808
Number of extensions: 446126
Number of successful extensions: 1309
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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