Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P04
(873 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 50 2e-08
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 46 3e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 2e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 43 3e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 43 4e-06
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 42 7e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 5e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 39 5e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 9e-05
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 32 0.006
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 31 0.014
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 30 0.032
DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein. 25 0.91
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 8.5
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.5
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 50.4 bits (115), Expect = 2e-08
Identities = 42/129 (32%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Frame = +1
Query: 94 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 252
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 253 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTGRGTTLSAXR 429
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G T
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYN-NADGEYGVTTMTKA 125
Query: 430 XF*LTGPVL 456
TG VL
Sbjct: 126 ILHYTGKVL 134
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 46.4 bits (105), Expect = 3e-07
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Frame = +1
Query: 82 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRE 240
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 241 SESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 390
T + ++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.2 bits (102), Expect = 8e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 112 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 276
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 277 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 378
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 44.0 bits (99), Expect = 2e-06
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +1
Query: 112 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 270
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 271 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 390
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 43.2 bits (97), Expect = 3e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +1
Query: 139 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 303
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 304 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 390
WN E+G L V SE +W PD+VL N A
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 42.7 bits (96), Expect = 4e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +1
Query: 118 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 285
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 286 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 384
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 42.7 bits (96), Expect = 4e-06
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Frame = +1
Query: 139 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 303
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 304 WNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTGRGT 411
WN E+ G ++ +LW+PD+++ N+A GT
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGT 154
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 42.7 bits (96), Expect = 4e-06
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Frame = +1
Query: 139 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 303
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 304 WNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTGRGT 411
WN E+ G ++ +LW+PD+++ N+A GT
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGT 154
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTGR 405
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 406 GT 411
GT
Sbjct: 85 GT 86
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTGR 405
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 406 GT 411
GT
Sbjct: 85 GT 86
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTGR 405
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 406 GT 411
GT
Sbjct: 85 GT 86
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTGR 405
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 406 GT 411
GT
Sbjct: 85 GT 86
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTGR 405
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 406 GT 411
GT
Sbjct: 85 GT 86
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTGR 405
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 406 GT 411
GT
Sbjct: 85 GT 86
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 7e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +1
Query: 139 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 303
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 304 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 390
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 7e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +1
Query: 139 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 303
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 304 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 390
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 5e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 193 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 369
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 370 VVLLNAA 390
+L N A
Sbjct: 92 TILYNNA 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 39.1 bits (87), Expect = 5e-05
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Frame = +1
Query: 91 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 255
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 256 RILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTGRGT 411
L++ W D + WN ++G L + RLW+PDV++ N+A GT
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGT 123
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 38.3 bits (85), Expect = 9e-05
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 190 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 363
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 364 PDVVLLNAA 390
PD+VL N A
Sbjct: 111 PDIVLFNNA 119
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 32.3 bits (70), Expect = 0.006
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +1
Query: 127 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 291
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 292 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 384
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.014
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +1
Query: 118 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 285
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 286 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLN 384
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.9 bits (64), Expect = 0.032
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +1
Query: 118 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 285
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 286 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLN 384
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
>DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein.
Length = 145
Score = 25.0 bits (52), Expect = 0.91
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 58 YIILLPFLLTCAIAS-AAECENATSLSLMIDSLLAT 162
Y ILL L+TC I S + C T S + D ++AT
Sbjct: 3 YSILLSLLITCLICSPSVHC--GTRPSFVSDEMIAT 36
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.8 bits (44), Expect = 8.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 349 ERLWRPDVVLLNAAATTGRGTTL 417
+ +WRPD NA + T + T+
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTI 138
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 336 PSAAAPFPCVPTQS 295
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,141
Number of Sequences: 438
Number of extensions: 5078
Number of successful extensions: 53
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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