Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P04
(873 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR cla... 29 3.1
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 3.1
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 28 7.1
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 28 7.1
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 28 9.4
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 28 9.4
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 28 9.4
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 28 9.4
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 28 9.4
>At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 853
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = +1
Query: 40 HKMSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHL 219
H ST + P LL+ A CE + L S YD D I +NLT +L
Sbjct: 718 HGTSTKISLFTPTLLSFAACILISCERSFYLQFPAFS----YDWNRKDDEVISINLTPNL 773
Query: 220 RHANIRESESTV 255
++ E E TV
Sbjct: 774 NLSSEIEEEETV 785
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 778 GGAXPPXXXXXXXXPPPPRXGXXXXXXPPP 689
GG PP PPPP G PPP
Sbjct: 676 GGGPPPPPPPPGGGPPPPPGGGPPPPPPPP 705
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 781 GGGAXPPXXXXXXXXPPPPRXGXXXXXXPP 692
GGG PP PPPP G PP
Sbjct: 676 GGGPPPPPPPPGGGPPPPPGGGPPPPPPPP 705
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 67 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 225
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 67 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 225
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/58 (27%), Positives = 16/58 (27%)
Frame = -3
Query: 865 PPPXXPAXXRXXXXXXXXXXXGXXXXGXGGGAXPPXXXXXXXXPPPPRXGXXXXXXPP 692
PPP PA G GG PP PPPP PP
Sbjct: 370 PPPPVPAPQMPSSAGPPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPP 427
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/58 (27%), Positives = 16/58 (27%)
Frame = -3
Query: 865 PPPXXPAXXRXXXXXXXXXXXGXXXXGXGGGAXPPXXXXXXXXPPPPRXGXXXXXXPP 692
PPP PA G GG PP PPPP PP
Sbjct: 370 PPPPVPAPQMPSSAGPPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPP 427
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 67 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 225
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 67 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 225
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 778 GGAXPPXXXXXXXXPPPPRXGXXXXXXPP 692
GG+ PP PPPP G PP
Sbjct: 258 GGSAPPPPHMGGSAPPPPHMGQNYGPPPP 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,383,047
Number of Sequences: 28952
Number of extensions: 354304
Number of successful extensions: 1021
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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