Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P03
         (893 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    28   0.086
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   0.80 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.80 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   7.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   7.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 0.086
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 249 PRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVPGWRP 136
           PRS  T  G P P  +  A+PP +  ++  PQ+  +RP
Sbjct: 215 PRSVATPTGIPTPSTS--ASPPTVNIKKESPQMQSYRP 250


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 327 DGTEAGR--RVRQAARPRLQHGPPRVEPPRSNYTFAGA 220
           D   +GR  R R+  +P  + G P  E  R    F+GA
Sbjct: 201 DRPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGA 238


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 444 YLKEVPAKTPMAGQHLRQPEGEASAVAAHPVREDRTDRLDGT 319
           YLK  P   P  G H    +   S++A +P    R  R + T
Sbjct: 33  YLKSAPYPVPGLGLHGLPVDSLHSSMAGYPAGNQRKQRRERT 74


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 380 RHPRSRPTQSARTGRTASTVRRP 312
           RH +SR  +  +TGR   T R P
Sbjct: 209 RHNQSRSKRQPKTGREDQTRRNP 231


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 19   CHALTRENVAALRRPQRAIAVRAIRGYRTVSFE 117
            CH +  +    ++ P R +   A +G + VSF+
Sbjct: 1683 CHNIKTQGWTVVQDPNRRMGPYAYKGDQWVSFD 1715


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -3

Query: 276 QHGPPRVEPPRSNYTFAGAPFPPRAEVATP 187
           Q GPP  +PP       G   P     A P
Sbjct: 200 QQGPPHQQPPIQQQPNQGQQPPGNTAAALP 229


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -3

Query: 276 QHGPPRVEPPRSNYTFAGAPFPPRAEVATP 187
           Q GPP  +PP       G   P     A P
Sbjct: 202 QQGPPHQQPPIQQQPNQGQQPPGNTAAALP 231


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 145 PWDLGAEALA 174
           PWD  AEALA
Sbjct: 332 PWDKNAEALA 341


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,184
Number of Sequences: 336
Number of extensions: 2069
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)