Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P03
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   6.3  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   8.3  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 438 KEVPAKTPMAGQHLRQPE--GEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQ 274
           + +P+K P  GQH RQ     + +    H +R++ T     TE G+  RQ + P  Q
Sbjct: 678 ESIPSKQPTEGQHARQESLPSQQTTETKH-LRKESTPSKQPTE-GQHTRQESLPSQQ 732



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
 Frame = -3

Query: 213  PPRAEVATPPVIGSERLRPQVPGWRPGEQAR-----RLEGDGAVSSDRPDRDRALRTSQR 49
            PPR    TP  I    L PQ+  W P    R     R   +G       +++R     ++
Sbjct: 1188 PPRPFNLTPFAISLNALTPQLKPWLPPTDTRLRPDQRAMENGQYDLAASEKNRLEEKQRK 1247

Query: 48   RDVLAGQGVAPYGSP 4
            +  +  QG  P  SP
Sbjct: 1248 KRRMREQGEMPPWSP 1262


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 267 PPRVEPPRSNYTFAGAPFPPRAEVATPP 184
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -3

Query: 420 TPMAGQHLRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRS 241
           TP+  +HL+  +         P+ + + D  D         Q   P++Q    R EP  S
Sbjct: 104 TPLNNKHLKSQD--------QPLSDSQLDTGDSPATSETTVQDYNPQVQ-SYCRPEPLSS 154

Query: 240 NYTFAGAPFPP 208
           N+  +  PFPP
Sbjct: 155 NHVRSCPPFPP 165


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
 Frame = -3

Query: 252 PPRSNYTFAGAPFP-------PRAEVATPPVIGSERLRPQVPGWRPGEQARRLEGDGAVS 94
           PP SNY  A  P+        P++  A PP   S R R   P + PG    +    G   
Sbjct: 98  PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153

Query: 93  SDRPDRDRALRTSQRRDV 40
           S RP    A R  +  DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 19   CHALTRENVAALRRPQRAIAVRAIRG 96
            C  LT EN++A  R Q   AVR + G
Sbjct: 1017 CKLLTHENISASHRQQLQSAVRNVLG 1042



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
 Frame = -3

Query: 390 PEGEASAVAAH--PVREDRTDRLDGTEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 232
           P   AS + ++  PV E      +   +G    R RQ  R R    P  PRV  P   Y 
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270

Query: 231 FAGAPFPPRAEVATPPVIGS 172
                +PP    A P   GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 83  GRSEDTAPSPSRRRACSPGRHPGT--WGRRRSLPITGGVATSALGGKGAPAKV*FERGGS 256
           G+  D  P PS  R C    H G+     +++L +TGG +     G G  A V F R GS
Sbjct: 14  GKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTL-LTGGDS-----GIGKAAAVMFAREGS 67

Query: 257 TLGGPC 274
            L   C
Sbjct: 68  DLVISC 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,615
Number of Sequences: 5004
Number of extensions: 31700
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)