Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P03
(893 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 31 1.3
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 31 1.7
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3) 30 2.2
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_57631| Best HMM Match : Gb3_synth (HMM E-Value=5.1) 30 2.9
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3) 29 3.8
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 6.7
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39) 29 6.7
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 6.7
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 29 6.7
SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5) 28 8.9
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07) 28 8.9
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 28 8.9
SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016) 28 8.9
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 28 8.9
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) 28 8.9
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 28 8.9
SB_1963| Best HMM Match : rve (HMM E-Value=0.022) 28 8.9
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -3
Query: 345 DRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPP 247
DR+DR D A RR RPRLQ PR +PP
Sbjct: 545 DRSDRYDDHGADRRDAPKERPRLQL-QPRTKPP 576
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 303 VRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPV 181
V A P + PPR PP++ P PP A+V+ PP+
Sbjct: 144 VHGLAHPSITQPPPRHSPPQTPVP-PPPPLPPFAQVSLPPL 183
>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
Length = 321
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 431 YRPKHPWPVNICV--SRKVRHPRSRPTQSARTGRTASTVRRP 312
Y P HP +ICV SRK R RPT A G +ST RRP
Sbjct: 119 YEPNHPTE-SICVLASRK----RWRPTDDAGFGPNSSTKRRP 155
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Frame = -3
Query: 300 RQAARPRLQHG--PPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVPGWRPGEQ 127
R A P Q G P+++ P T FPP+ PP PQ PG P Q
Sbjct: 555 RPGAPPTSQPGFPSPQMQEPMQLPTSQPGGFPPQQRPGAPPTSQPGGFPPQRPGMPPMSQ 614
Query: 126 --ARRLEGDGAVSSDRPDR 76
+ ++ G S P +
Sbjct: 615 PSSMHMQPSGQPQSTAPQQ 633
>SB_57631| Best HMM Match : Gb3_synth (HMM E-Value=5.1)
Length = 180
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 431 YRPKHPWPVNICV--SRKVRHPRSRPTQSARTGRTASTVRRP 312
Y P HP +ICV SRK R RPT A G +ST RRP
Sbjct: 74 YEPNHPIE-SICVLASRK----RWRPTDDAGFGPNSSTKRRP 110
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = -3
Query: 327 DGTEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVP 148
DG RR R A+P L P + P S PP+A+V PV+ S P
Sbjct: 38 DGGNTNRRTRIQAKPALNLPSPPSKTPSS--------VPPQAKVDETPVLPSPPTNTPRP 89
Query: 147 GWRPGEQARRLE 112
P + RRL+
Sbjct: 90 SRIPRLKRRRLQ 101
>SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3)
Length = 237
Score = 29.5 bits (63), Expect = 3.8
Identities = 34/127 (26%), Positives = 49/127 (38%)
Frame = -3
Query: 396 RQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAP 217
R + + S A TDR DGT A R QA R N+T++G
Sbjct: 119 RPRDRQQSRRTARSPPHSTTDREDGTLAERHAPQAPRSVFSAKKCNRGTLSKNWTWSGPY 178
Query: 216 FPPRAEVATPPVIGSERLRPQVPGWRPGEQARRLEGDGAVSSDRPDRDRALRTSQRRDVL 37
P R P + R+ P+V GEQ+ + +DR R R ++ +R + L
Sbjct: 179 SPDRVGKRRVP---NSRVWPKV-----GEQSNTWR--ILLRNDRKSRHRRIKKQRRYERL 228
Query: 36 AGQGVAP 16
A P
Sbjct: 229 AATSQLP 235
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 267 PPRVEPPRSNYTFAGAPFPPRAEVATPP 184
PP PP +++T G P PP + A P
Sbjct: 283 PPTRGPPSNSFTTQGPPLPPSRDQAPAP 310
>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
Length = 1486
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -1
Query: 467 CAVGSLPAILKRYRPKHPWPVNICVSRKVRHP-RSRPTQSARTGRTASTVRRPADGSAKR 291
C L L+ Y +HP ++ SR+ R R P S + R T+ P+D +
Sbjct: 514 CVYHLLSKKLRMYLLRHPPKNSVRSSRRDRASLRDEPDASTKKLRIEETLGPPSDERLAK 573
Query: 290 RDHASSTDRREWSLRAR 240
A STD + R +
Sbjct: 574 VSQAESTDSTDDDARRK 590
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 267 PPRVEPPRSNYTFAGAPFPPRAEVATPP 184
PP PP +++T G P PP + A P
Sbjct: 195 PPTRGPPSNSFTTQGPPLPPSRDQAPAP 222
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 374 PRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRREWSLRA 243
PRS Q++R + ST+ R D A R ++ST R +A
Sbjct: 589 PRSTDAQASRAATSNSTIPRSTDAQASRAATSNSTIPRSTDAQA 632
>SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5)
Length = 398
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 267 PPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVPGWR 139
PP PP Y F G P PP V ER++P VP R
Sbjct: 360 PPPPLPPGDGYEFQGVPPPPMEFV-------KERMKPLVPPLR 395
>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
Length = 1118
Score = 28.3 bits (60), Expect = 8.9
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 11 PYGATP*PARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSP--GRHPGTWGRRRSLPIT 184
P G+ P P+ T++ S+ S +A SPS A SP G S PI
Sbjct: 293 PLGSEPEPSGTNQTEAADSSTQDSSAVTGSALSPSTGSASSPVAGSTSSPVTGSTSSPIA 352
Query: 185 GGVATSALGGK 217
G V +S +GGK
Sbjct: 353 GSV-SSPVGGK 362
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Frame = -3
Query: 300 RQAARPRLQHGPPRVEPPRSNYTFAGAPFPP------RAEVATPPVIGSERLRPQVPGW 142
++AA P + GPP PP GAP PP A PP IG P PG+
Sbjct: 651 KEAATP--EAGPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGF 707
>SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016)
Length = 491
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 295 LADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTAXCH 474
+ P R R V W D C ++++ M+ GC G Y++K+ T
Sbjct: 359 MTQPHPDARDGVVQRTVCFHW---DGDCCHYQVSIMV--RGCLGYYVYKLPSVNFTINAR 413
Query: 475 HCAD 486
+CAD
Sbjct: 414 YCAD 417
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 389 RKVRHPRSRPTQSARTGRTASTVR-RPADGSAKRRDHASSTDRRE 258
R+ R+ S+P+ S+ R R R D RRD++S +R+E
Sbjct: 348 RESRNSESKPSSSSSKNRNTGLERGRVQDFGRDRRDYSSDKNRKE 392
>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
Length = 660
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 23 TP*PARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPG 151
TP P+RTS + RSR+G T P+P+ RA S G G
Sbjct: 563 TPPPSRTS------TPRSRAGSRTRTPPTPTSSRASSRGSAGG 599
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 267 PPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVPGWR 139
PP PP Y F G P PP V ER++P VP R
Sbjct: 2111 PPPPLPPGDGYEFQGVPPPPMEFV-------EERMKPLVPPLR 2146
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = -3
Query: 327 DGTEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVP 148
DG RR R A+P L P + P S PP+A+V P++ S P
Sbjct: 78 DGGNTNRRTRIPAKPALNLPSPPSKTPSS--------VPPQAKVDETPLLPSPPTSTPRP 129
Query: 147 GWRPGEQARRLE 112
P + RRL+
Sbjct: 130 SHIPRLKRRRLQ 141
>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
Length = 931
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = -1
Query: 392 SRKVRHPRSRPTQSARTGRTASTVRR------PADGSAKRR 288
SRKV+ PR R T +A G + +VRR P G KRR
Sbjct: 144 SRKVKAPRKRSTGNAGRGGASQSVRRSRVDPEPPAGFRKRR 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,124
Number of Sequences: 59808
Number of extensions: 320371
Number of successful extensions: 1863
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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