Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P03
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 33 0.21
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.36
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.36
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.36
Z75547-4|CAA99900.1| 201|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 30 1.9
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 30 1.9
Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical pr... 30 2.6
AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity... 30 2.6
U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF100305-6|AAC68915.1| 352|Caenorhabditis elegans Hypothetical ... 29 4.5
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 29 4.5
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 29 4.5
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 29 4.5
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 29 4.5
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 29 5.9
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.21
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -3
Query: 324 GTEAGRR----VRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRP 157
GTE+G R RQA + H PP V PP+ A P P + VA PP P
Sbjct: 255 GTESGARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPPPSTIAPAAP 310
Query: 156 QVPGWRPGE 130
P P +
Sbjct: 311 SAPAPAPSQ 319
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -3
Query: 285 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVPGWRP 136
P + GPP PP G P PP PP+ G P PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -3
Query: 285 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVPGWRP 136
P + GPP PP G P PP PP+ G P PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -3
Query: 285 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVPGWRP 136
P + GPP PP G P PP PP+ G P PG P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
>Z75547-4|CAA99900.1| 201|Caenorhabditis elegans Hypothetical
protein R11D1.3 protein.
Length = 201
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 515 VCSXVXSXSRSAQWWXCAVGSLPAIL 438
+C V + SA+WW CA+ LP+++
Sbjct: 163 ICKKVVNQHVSAKWWGCALKLLPSVM 188
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = -3
Query: 351 REDRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGS 172
R+ + EA R R+ R R P PPR+N P PP + P
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPC 122
Query: 171 ERLRPQVPGWRPGEQ 127
+R +P P +P Q
Sbjct: 123 QRPQPPQPQPQPYPQ 137
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = -3
Query: 351 REDRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGS 172
R+ + EA R R+ R R P PPR+N P PP + P
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPC 122
Query: 171 ERLRPQVPGWRPGEQ 127
+R +P P +P Q
Sbjct: 123 QRPQPPQPQPQPYPQ 137
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = -3
Query: 351 REDRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGS 172
R+ + EA R R+ R R P PPR+N P PP + P
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPC 122
Query: 171 ERLRPQVPGWRPGEQ 127
+R +P P +P Q
Sbjct: 123 QRPQPPQPQPQPYPQ 137
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/49 (46%), Positives = 25/49 (51%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWGRRRSLPI 181
AR +RR RS R GRS + SPSRRR S R RRR PI
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRT-SRDRRDDRSSRRRRGPI 158
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/49 (46%), Positives = 25/49 (51%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWGRRRSLPI 181
AR +RR RS R GRS + SPSRRR S R RRR PI
Sbjct: 134 AREARRSRSRSRDRRGGRSR--SRSPSRRRT-SRDRRDDRSSRRRRGPI 179
>Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical
protein C48D1.3 protein.
Length = 576
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 64 QRAIAVRAIRGYRTVSFEAA--CLLAGAPPWDLGAEALAADYR 186
QR ++ + G +T+SF A C+L PP +GA A D+R
Sbjct: 255 QRVLSSKTAHGAQTLSFVAGVGCILMAIPPALIGAIARNTDWR 297
>AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity
choline transporterCHO-1 protein.
Length = 576
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 64 QRAIAVRAIRGYRTVSFEAA--CLLAGAPPWDLGAEALAADYR 186
QR ++ + G +T+SF A C+L PP +GA A D+R
Sbjct: 255 QRVLSSKTAHGAQTLSFVAGVGCILMAIPPALIGAIARNTDWR 297
>U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical
protein R11F4.3 protein.
Length = 418
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 285 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRPQVP 148
PR PP + P + T P PP A P+I +E RPQ+P
Sbjct: 160 PRFAEVPPIPDAPTNPPTTTTPPPPPPTR-APRPIIPTEVRRPQMP 204
>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
protein C27B7.7 protein.
Length = 1471
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 205 SRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPSAGL 318
+RG+ RPS V + R ++ + ++ WSR A SAG+
Sbjct: 469 ARGKPRPSISVAISDRKNASQVEVDVWSRLQATSSAGI 506
>AF100305-6|AAC68915.1| 352|Caenorhabditis elegans Hypothetical
protein W04B5.2 protein.
Length = 352
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 6 GSRMVPRPDPRERRGAA---TSAARDRGQGDPRIP 101
G R P P PR+R GA +AA D G PR+P
Sbjct: 121 GFRQPPPPPPRKRTGAQPVYPAAANDPGDELPRLP 155
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWGRRR 169
AR +RR RS R GRS + SPSRRR R + RRR
Sbjct: 27 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 69
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWGRRR 169
AR +RR RS R GRS + SPSRRR R + RRR
Sbjct: 55 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 97
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWGRRR 169
AR +RR RS R GRS + SPSRRR R + RRR
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 155
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWGRRR 169
AR +RR RS R GRS + SPSRRR R + RRR
Sbjct: 114 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 156
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = -3
Query: 438 KEVPAKTPMAGQHLRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQHG 268
++ P+ + ++LR+P + + ++ P+ + +RLD TE R L+HG
Sbjct: 32 QQTPSSSSSKRKNLRKPSTDDTPSSSEPL--SKKNRLDSTETAEEDNTRRRRTLKHG 86
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Frame = -3
Query: 453 PSGYLKEVPAK-----TPMAGQHLRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAA 289
P LK P K P AG ++ + A++V V+E+ D+ + T G RQ
Sbjct: 1204 PDSALKPAPTKRKASEAPSAGVATKKGKAMAASVDEIQVKEEEEDQKEET-VGSVERQE- 1261
Query: 288 RPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPP 184
PP+ +P ++ A AP PP + PP
Sbjct: 1262 -------PPK-KPVADDHKSAIAPLPPANTIMPPP 1288
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.3 bits (60), Expect = 7.8
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Frame = -3
Query: 453 PSGYLKEVPAKTPMAGQHLRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQ 274
P+ + P+K+P A + R P G S R R R A R RQ+ P+ +
Sbjct: 449 PAPRRRRSPSKSPQAPRRRRSPSGSKS-------RSPRRRR--SPAAAPRRRQS--PQRR 497
Query: 273 HGPPRVEPPRSNYTFAGAPFPPR-----AEVATPPVIGSERLRPQVP 148
P R P S+ P PPR +E P + S ++ + P
Sbjct: 498 RSPRRRRSPSSSSRSRSPPPPPRRPRQDSEQQAPVAVKSPEMKKRRP 544
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +2
Query: 101 APSPSRRRACSPGRHPGTWGRRRSLPITGGVATSALGGKGAPAKV*FERGGSTLGG 268
A +PS C G G G + GG ATS GG G A GG + GG
Sbjct: 203 AVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYSSGG 258
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +2
Query: 101 APSPSRRRACSPGRHPGTWGRRRSLPITGGVATSALGGKGAPAKV*FERGGSTLGG 268
A +PS C G G G + GG ATS GG G A GG + GG
Sbjct: 203 AVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYSSGG 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,632,006
Number of Sequences: 27780
Number of extensions: 223049
Number of successful extensions: 1009
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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