Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P03
(893 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36980.1 68417.m05240 expressed protein 31 1.0
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 29 3.1
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 29 4.2
At3g54680.1 68416.m06050 proteophosphoglycan-related contains si... 29 5.5
At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 29 5.5
At1g13830.1 68414.m01623 beta-1,3-glucanase-related similar to b... 29 5.5
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 25 6.7
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 28 7.3
At3g30380.1 68416.m03835 expressed protein ; expression supporte... 28 7.3
At2g46980.2 68415.m05869 expressed protein 28 7.3
At2g46980.1 68415.m05868 expressed protein 28 7.3
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family... 24 7.9
At4g15410.1 68417.m02355 UBX domain-containing protein low simil... 28 9.6
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 28 9.6
At3g05545.1 68416.m00609 transcription factor, putative / zinc f... 28 9.6
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 38 RTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWGRRRSLP 178
R+ R RS RSR S + SPSR + SP RH R LP
Sbjct: 500 RSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRHADALHLIRGLP 546
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -1
Query: 461 VGSLPAILKRYRPKHPWPVN---ICVSRKVRHPRSRPT 357
VG PAI++ +RP WP V KVR+ + PT
Sbjct: 1246 VGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPT 1283
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +1
Query: 142 PPWDLGAEALAADYRWRSDLRSRGEGRPSEGVVRARRLHSRRSVLEAWSRRL 297
P D G + A +R DL SRG+G S+ V R +LE W+ RL
Sbjct: 129 PKGDDGTGLMDAIFRAIRDL-SRGDGNDSQVVGHIAREAPEGKLLETWTERL 179
>At3g54680.1 68416.m06050 proteophosphoglycan-related contains
similarity to proteophosphoglycan [Leishmania major]
gi|5420389|emb|CAB46680
Length = 211
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 342 RTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERL 163
R D G + R VR P L P E PR Y G P P++ G ER+
Sbjct: 146 RKDEKPGLNSSR-VRDP-NPNLNQRLPNQEQPRQEYFGYGQPGRPKSG-------GYERI 196
Query: 162 R--PQVPGWRPG 133
R P++ G RPG
Sbjct: 197 RTDPRITGNRPG 208
>At1g53260.1 68414.m06035 hypothetical protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 358
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 267 PPRVEPPRSNYTFAGAPFPP 208
PP ++PP N + G P PP
Sbjct: 216 PPHIQPPNMNQNYRGPPPPP 235
>At1g13830.1 68414.m01623 beta-1,3-glucanase-related similar to
beta-1,3-glucanase-like protein (GI:14279169) [Olea
europaea] similar to Glucan endo-1,3-beta-glucosidase
precursor (EC 3.2.1.39) ((1-3)-beta- glucan
endohydrolase) ((1-3)-beta-glucanase) (Beta-1,3-
endoglucanase) (Swiss-Prot:P52409) [Triticum aestivum]
Length = 197
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -3
Query: 267 PPRVEPPRSNYT-FAGAPFPPRAEVATPPVIGSERL-RPQVPG 145
PP P + T F G PFP TPPV G + P PG
Sbjct: 121 PPTGTTPTNGTTPFPGTPFPGTPFPGTPPVFGPTGVFNPSNPG 163
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 25.4 bits (53), Expect(2) = 6.7
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = -3
Query: 369 VAAHPVREDRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPP 208
V A P + G G Q +RP PP PP+ + G P PP
Sbjct: 123 VQAQPGLSGPVRGIGGPAPGMMQPQISRPPQIIRPPGQMPPQPPFAGQGGPPPP 176
Score = 21.4 bits (43), Expect(2) = 6.7
Identities = 10/30 (33%), Positives = 12/30 (40%)
Frame = -3
Query: 225 GAPFPPRAEVATPPVIGSERLRPQVPGWRP 136
G PP + PP G+ P PG P
Sbjct: 215 GMQGPPPSRPGMPPPGGAPMFAPPHPGMPP 244
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 416 PWPVNICVSRKVRHPRSRPTQSARTGRTASTVR 318
P PV +CV R R P P ++R R TVR
Sbjct: 340 PSPVVLCVPRAPRPPPPSPVSNSRARRGFPTVR 372
>At3g30380.1 68416.m03835 expressed protein ; expression supported
by MPSS
Length = 399
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 371 RSRPTQSARTGRTASTVRRPADGSAKRRDHA-SSTDRRE 258
R+ P R+++ +R PA S +RD + +STD+RE
Sbjct: 267 RNGPVPLTEKARSSTDIREPARPSTDQRDKSRTSTDQRE 305
>At2g46980.2 68415.m05869 expressed protein
Length = 516
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 193 SDLRSRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPS 309
S + + GR VV+ R+ HSR+ WSR+ A S
Sbjct: 318 SVMPKKQRGRRKNTVVKCRKAHSRKKDEADWSRKEASKS 356
>At2g46980.1 68415.m05868 expressed protein
Length = 516
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 193 SDLRSRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPS 309
S + + GR VV+ R+ HSR+ WSR+ A S
Sbjct: 318 SVMPKKQRGRRKNTVVKCRKAHSRKKDEADWSRKEASKS 356
>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
protein
Length = 635
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -3
Query: 291 ARPRLQHGPPRVEPPRSNYTFAGA 220
+RP PP V PP T GA
Sbjct: 540 SRPNAAFSPPTVSPPAHGCTACGA 563
Score = 22.2 bits (45), Expect(2) = 7.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 240 NYTFAGAPFPPRAEVATPP 184
++TF GA PP A TPP
Sbjct: 572 HFTFNGATSPPSA-ATTPP 589
>At4g15410.1 68417.m02355 UBX domain-containing protein low
similarity to XY40 protein [Rattus norvegicus]
GI:2547025; contains Pfam profile PF00789: UBX domain
Length = 421
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 95 DTAPSPSRRRACSPGRHPGTWGRR 166
+T+PSPSR R+ SP +G R
Sbjct: 83 ETSPSPSRSRSASPSSRAAPYGLR 106
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -3
Query: 285 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPP 184
P + PP PP + AP PP ++ PP
Sbjct: 113 PSTPNPPPEFSPPPPDLDTTTAPPPPSTDIPIPP 146
>At3g05545.1 68416.m00609 transcription factor, putative / zinc
finger (C3HC4 type RING finger) family protein similar
to VIP2 protein [Avena fatua] gi|6996144|emb|CAB75506;
contains Pfam domain PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 425
Score = 27.9 bits (59), Expect = 9.6
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Frame = -3
Query: 273 HGPPRVEPPRSNYTFAGA-------PFPPRAEVATPPVIGSERLRPQVPGW-RP--GEQA 124
H PP PP +++ +GA P PP A T GS+ +RP+ P + RP G +
Sbjct: 231 HPPP--PPPPQHFSASGAHVGSPTQPTPPPAAARTSRANGSDMIRPRPPHFTRPFHGHSS 288
Query: 123 RRLEGDGAVSSDR--PDRDRALRTSQRRDVL 37
G S R P RT R L
Sbjct: 289 SGRAGSSVASVPRTPPFPGSNARTRDRMQAL 319
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,430,288
Number of Sequences: 28952
Number of extensions: 212360
Number of successful extensions: 1054
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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