Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P01
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.17
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
12_01_0524 - 4167867-4168445 30 2.8
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 30 2.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.4
12_02_0581 - 20785198-20785962,20786107-20786649 28 8.4
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.4
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.4
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.4
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.4
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 344 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 180
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 397 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 549
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.9 bits (64), Expect = 2.8
Identities = 30/97 (30%), Positives = 42/97 (43%)
Frame = -2
Query: 341 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 162
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 161 CEERVDHEGQ*CCVFAFCRTSYSTSEEKPVTE*YKSS 51
E V+ E + C A TS S E P+ + SS
Sbjct: 161 -VEEVEEEEEKECSSA---TS-SHESEAPIAQSMHSS 192
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 730 PPXXKRXAGPAPXFXPGVXPXXGPPXGXFAL 822
PP R GP P PG P PP G L
Sbjct: 151 PPGMPRYPGPYPMMRPGFPPRPMPPVGVMPL 181
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 242 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 358
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>12_02_0581 - 20785198-20785962,20786107-20786649
Length = 435
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 30 RSVVIKCRRLILFCYRFLL----TCAIASAAECENATSLSLMIDSL 155
RS++ KC+ L C F+L + I A C N S+SL ++ L
Sbjct: 208 RSLLGKCKSLEKLCLHFILGLTDSDMITLAQNCSNLRSISLQLEPL 253
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 248 VHRANTGRSSNELDRQTTELERRGVG 325
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 77 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 217
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 426 GRGERSPRRWLQPRLAVPRQASTSVPRTP 340
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 423 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 301
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,220,901
Number of Sequences: 37544
Number of extensions: 516663
Number of successful extensions: 1582
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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