Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O23
         (941 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               279   3e-75
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         242   2e-64
SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)                   38   0.016
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.1  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   9.5  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  279 bits (683), Expect = 3e-75
 Identities = 123/183 (67%), Positives = 147/183 (80%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGS
Sbjct: 5   FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGS 64

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW   
Sbjct: 65  KLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNS 124

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
                      W D+ G+KSIE+DF  M +YC V+RVI HTQ KLLK RQKKAHIMEIQ+
Sbjct: 125 KKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQV 184

Query: 590 NGG 598
           NGG
Sbjct: 185 NGG 187



 Score = 33.1 bits (72), Expect = 0.33
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 694 EXIXCIGVXKGIXYKGVXSRWXXRXLPR 777
           E I  IGV KG  +KGV  RW  + LPR
Sbjct: 215 EMIDVIGVTKGHGFKGVTYRWGTKKLPR 242


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  242 bits (593), Expect = 2e-64
 Identities = 106/169 (62%), Positives = 129/169 (76%)
 Frame = +2

Query: 29  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 208
           P      F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++R
Sbjct: 46  PKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILR 105

Query: 209 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 388
           E ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRF
Sbjct: 106 EVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRF 165

Query: 389 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 535
           YKNW              W D+ G+KSIE+DF  M +YC V+RVI HTQ
Sbjct: 166 YKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214



 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  LSSSMSHRKFSAPRSWVYGILSQK 93
           L   MSHRKF APR    G L +K
Sbjct: 44  LEPKMSHRKFEAPRHGSLGFLPRK 67


>SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)
          Length = 391

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +2

Query: 548 KQRQKKAHIMEIQLNGGTIEDK*MGQRTLENYPVDSVLPXMXSVRXXXMNXLXALVSPRA 727
           K+ Q K H  ++   GG I D+ M Q T E Y V S  P    +R    + L A   P A
Sbjct: 61  KEEQAKMHNQQLAWLGGNILDRQMRQGTSEYYAVQSTTPEPGDIRPVKDSGLHASPGPMA 120

Query: 728 XD 733
            D
Sbjct: 121 MD 122


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 29  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 157
           P C T+  QHP   S+ F  KK +  ++G  K++ K  P+KPV
Sbjct: 191 PVCDTDGQQHPNLCSLHFQGKKLA--YKGFCKSYCK-SPTKPV 230


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 524 AHTQMKLLKQRQKKAHIMEIQLNGGTIEDK*MGQRTLENYPVDS 655
           A+ Q+K + + QKK H+ E++     I+D    +R+LE+   DS
Sbjct: 68  AYRQLKAMLEDQKKEHMAEVRKFQREIDDLRRQKRSLEDQLRDS 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,481,175
Number of Sequences: 59808
Number of extensions: 500947
Number of successful extensions: 1051
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)