Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O19
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0098 + 25560158-25560925                                         32   0.67 
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    31   0.89 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   1.2  
06_01_0350 + 2534422-2535615                                           31   1.5  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   3.6  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   6.2  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   6.2  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     28   8.3  

>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -3

Query: 495 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 316
           HRP P P  +   P L  +P + V   I   P PT F + +      ++++   +  T P
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
 Frame = -1

Query: 308 PSPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 150
           P P+ SRS  ES R  P          S   +  +   GFHG   L+   KL PDL +  
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226

Query: 149 SGHFGLPRRTLVFKXRG 99
             HF      LVF  RG
Sbjct: 227 MEHFNPATNQLVFPGRG 243


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -3

Query: 516 TNIDQTRH------RPHPLPVQTRHAPVLRANP 436
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 210 PWNSNAQAEKKTLPGPLGGVFRP 142
           PW S+A+ E+K LP PL  +F P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 486 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 397
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 480 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 367
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 492 RPHPLPVQTRHAPVLRANPYSEVTDP 415
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 394 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 269
           + +L+ RG  P +PAA     RRD   ++P  + Q P    G
Sbjct: 28  HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,439,391
Number of Sequences: 37544
Number of extensions: 554140
Number of successful extensions: 1745
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)