Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O18
         (1034 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O35328 Cluster: Proline-rich protein 9-1; n=2; Mus musc...    28   3.8  
UniRef50_UPI0000F2EA07 Cluster: PREDICTED: hypothetical protein;...    33   9.1  

>UniRef50_O35328 Cluster: Proline-rich protein 9-1; n=2; Mus
           musculus|Rep: Proline-rich protein 9-1 - Mus musculus
           (Mouse)
          Length = 181

 Score = 27.9 bits (59), Expect(2) = 3.8
 Identities = 13/47 (27%), Positives = 16/47 (34%)
 Frame = -2

Query: 982 GXGXXXXXXAGXWWXNXXXXPPTRXRXXXXKXXGSKXXTPXTPPPPP 842
           G G       G  W +     P R R    +    +   P  PPPPP
Sbjct: 100 GGGGGKRWQLGGLWRSRLRSCPARARVLPLRPPPHRPRRPPPPPPPP 146



 Score = 25.8 bits (54), Expect(2) = 3.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 868 TPXTPPPPPP 839
           TP +PPPPPP
Sbjct: 159 TPPSPPPPPP 168


>UniRef50_UPI0000F2EA07 Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 92

 Score = 33.5 bits (73), Expect = 9.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 144 PKAXKNRHXTFXRWRGTKKFSKNSPKLRAPNPGGLSXGNFPXEPPGK 4
           P A   R  ++    G K+  + +P  R P PG    G+ P EPPG+
Sbjct: 6   PAAGALRGLSWAGRPGVKRSPRAAPPERGPEPGAQPTGHGPPEPPGR 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,124,590
Number of Sequences: 1657284
Number of extensions: 9137610
Number of successful extensions: 52373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43821
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 99205072461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)