Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O18
         (1034 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0796 + 6190931-6192745                                           32   0.86 
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    24   4.9  
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976...    29   8.0  
07_03_0004 - 12260322-12261432,12261691-12261821,12262386-122624...    29   8.0  
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381...    24   9.3  

>01_01_0796 + 6190931-6192745
          Length = 604

 Score = 31.9 bits (69), Expect = 0.86
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -2

Query: 922 PPTRXRXXXXKXXGSKXXTPXTPPPPPP 839
           PP R R       GS    P  PPPPPP
Sbjct: 176 PPLRRRGGKRPIQGSSVPPPPPPPPPPP 203


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 24.2 bits (50), Expect(2) = 4.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 883 GSKXXTPXTPPPPP 842
           G+K   P  PPPPP
Sbjct: 659 GNKFPAPPPPPPPP 672



 Score = 23.4 bits (48), Expect(2) = 4.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 865 PXTPPPPPP 839
           P  PPPPPP
Sbjct: 709 PSAPPPPPP 717


>12_01_0969 -
           9765114-9765664,9767963-9768512,9769507-9769561,
           9769918-9769980,9770547-9771325
          Length = 665

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 922 PPTRXRXXXXKXXGSKXXTPXTPPPPP 842
           PP R R    +   S   +P  PPPPP
Sbjct: 18  PPIRPRPPPVRPYASSAASPPPPPPPP 44


>07_03_0004 -
           12260322-12261432,12261691-12261821,12262386-12262491,
           12262777-12262875,12262960-12263312,12263593-12263619
          Length = 608

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 501 PLXKKXPXXXKTPPPPXKKK 560
           P+ +K P   K PPPP KK+
Sbjct: 91  PIIRKPPPKVKQPPPPPKKR 110


>04_04_0760 -
           27837170-27837328,27837441-27837504,27837812-27838160,
           27838906-27838960,27839489-27839821
          Length = 319

 Score = 24.2 bits (50), Expect(2) = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 868 TPXTPPPPPP 839
           T  TPPPPPP
Sbjct: 5   TTTTPPPPPP 14



 Score = 22.6 bits (46), Expect(2) = 9.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 856 PPPPPPXXXXXXXXKKK 806
           PPPPPP        K+K
Sbjct: 27  PPPPPPTSSTAAPKKRK 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,753,921
Number of Sequences: 37544
Number of extensions: 400471
Number of successful extensions: 4434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3652
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3047748156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)