Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O18
         (1034 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11402.1 68416.m01388 DC1 domain-containing protein contains ...    25   1.5  
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family...    26   5.7  

>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 708

 Score = 25.0 bits (52), Expect(2) = 1.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 865 PXTPPPPPPXXXXXXXXKKKXXV 797
           P  PPPPPP        +KK  +
Sbjct: 32  PPPPPPPPPPVLPHIRSRKKMDI 54



 Score = 24.2 bits (50), Expect(2) = 1.5
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = -2

Query: 922 PPTRXRXXXXKXXGSKXXTPXTPPPPPP 839
           PP        K    K      PPPPPP
Sbjct: 10  PPPSGFKRYKKKRSKKMDNKEVPPPPPP 37


>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
           protein
          Length = 558

 Score = 26.2 bits (55), Expect(2) = 5.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 880 SKXXTPXTPPPPPP 839
           S    P TPPPPPP
Sbjct: 253 SSPFAPPTPPPPPP 266



 Score = 21.0 bits (42), Expect(2) = 5.7
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = -2

Query: 865 PXTPPPPPPXXXXXXXXKKKXXVXXFF 785
           P  PPPPP         +K   V   F
Sbjct: 263 PPPPPPPPRPLAKAARAQKSPPVSQLF 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,022
Number of Sequences: 28952
Number of extensions: 245495
Number of successful extensions: 1901
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2540481952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)