Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O17
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)                 63   3e-10
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   4e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)                     47   2e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.004
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)                 31   1.6  
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)                  30   2.2  
SB_10665| Best HMM Match : PT (HMM E-Value=6.2)                        30   2.2  
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    29   5.0  
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)                    29   5.0  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 34/43 (79%), Positives = 37/43 (86%)
 Frame = -1

Query: 670 SPTYATXLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR 542
           +PTY+T LMS +  RLESSSTGSSFPAD  KPVPLAVVSLDSR
Sbjct: 88  TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSLDSR 130


>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
          Length = 521

 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = -3

Query: 410 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 306
           ++EHWAEITLRQH   PSQCFVLI+QSDSP  CQF
Sbjct: 48  NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82


>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +1

Query: 481 MPRHLISDAHEWINEIPTVPIYYLAKP 561
           MPRHLISDAHEWINEIPTVPI    +P
Sbjct: 1   MPRHLISDAHEWINEIPTVPIIEFLQP 27


>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
          Length = 167

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +2

Query: 398 SALNVNVKKFKQARVNGGSNYDSL 469
           +ALNV VKKF QARVNGGSNYDSL
Sbjct: 28  AALNVKVKKFNQARVNGGSNYDSL 51


>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = +2

Query: 401 ALNVNVKKFKQARVNGGSNYDSL 469
           ALNV VKKF QARVNG SNYDSL
Sbjct: 2   ALNVKVKKFNQARVNGWSNYDSL 24


>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 18/24 (75%), Positives = 19/24 (79%)
 Frame = +2

Query: 395 PSALNVNVKKFKQARVNGGSNYDS 466
           PSALNV VKKF QARVNGG   +S
Sbjct: 31  PSALNVKVKKFNQARVNGGDPLES 54


>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
          Length = 242

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 84  TNIDQTRHRPHPLPVQTRHAP 22
           T+  QT+HRPH  P QT H P
Sbjct: 167 TDPTQTQHRPHTDPTQTPHGP 187



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -2

Query: 93  T*RTNID--QTRHRPHPLPVQTRHAP 22
           T RT+ D  QT+HRP+  P QT+H P
Sbjct: 151 TTRTHTDPTQTQHRPNTDPTQTQHRP 176


>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
          Length = 540

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 27  RVGFGREADAAGAGSGRCSCVMFVLAS*YFNIMRPQ--KLYIFNMTLAKIVLRFGLDP 194
           R G   E     +G+G  +C MFV+A    N+M  Q   +     T  ++  R G+DP
Sbjct: 154 RDGVHLEIKRTASGTGTVNCHMFVVADALMNLMNGQLESIQYLAHTPERVSARSGMDP 211


>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
          Length = 215

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 84  TNIDQTRHRPHPLPVQTRHAP 22
           TN  QT+H PH  P QT H P
Sbjct: 111 TNPTQTQHGPHTNPTQTPHGP 131



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 84 TNIDQTRHRPHPLPVQTRHAP 22
          T+  +TRH PH  P +TRH P
Sbjct: 23 TDPTRTRHGPHTDPTRTRHGP 43


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 325 ESDCLIKTKHCDGPRGC*RNVISAQCSE 408
           E DC+  +KHCDG   C        C E
Sbjct: 73  EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100


>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
          Length = 1123

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 25/92 (27%), Positives = 37/92 (40%)
 Frame = -3

Query: 290 TAVVQNRVDRARNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKI 111
           T++  +    + +ETDT LR+G+   G R    +Q    +   E    Y+  L  H    
Sbjct: 528 TSIASDTEVISEDETDTLLRIGQLNSGDRIDYVLQERPLESLNE----YLFALSSHVCYC 583

Query: 110 LTR*NEHNARTSTRPGTGRIRFPSKPDTPRSS 15
           L   N H  R S     GR  +  K  T R +
Sbjct: 584 LELTNAHAQRDSI-AAVGRAFYGHKQTTTRKN 614


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 301  LTVERRSYRIVSIAHETKPTRPYG*EDPRKA-GERGSGSSPKRKT 170
            L+V  R Y++V ++HE          + R A   +GSGSSP R T
Sbjct: 1038 LSVSGRCYKVVPLSHELCLVSKSLWNNRRSADNPKGSGSSPTRDT 1082


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,984,613
Number of Sequences: 59808
Number of extensions: 560869
Number of successful extensions: 1435
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)