Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O17
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 30 2.5
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 30 2.5
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 30 2.5
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 30 2.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.4
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.4
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 4.4
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -3
Query: 299 DR*TAVVQNRVDRA--RNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRP 126
DR ++ R+ RA R + T G S+ + ++ E + R +K Q
Sbjct: 501 DRWVVSMKKRIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQ---- 556
Query: 125 HYIKILTR*NEHNARTSTRPGTGRIRFPSKPDT 27
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 -----LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -3
Query: 299 DR*TAVVQNRVDRA--RNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRP 126
DR ++ R+ RA R + T G S+ + ++ E + R +K Q
Sbjct: 470 DRWVVSMKKRIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQ---- 525
Query: 125 HYIKILTR*NEHNARTSTRPGTGRIRFPSKPDT 27
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 -----LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -3
Query: 299 DR*TAVVQNRVDRA--RNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRP 126
DR ++ R+ RA R + T G S+ + ++ E + R +K Q
Sbjct: 501 DRWVVSMKKRIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQ---- 556
Query: 125 HYIKILTR*NEHNARTSTRPGTGRIRFPSKPDT 27
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 -----LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -3
Query: 299 DR*TAVVQNRVDRA--RNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRP 126
DR ++ R+ RA R + T G S+ + ++ E + R +K Q
Sbjct: 470 DRWVVSMKKRIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQ---- 525
Query: 125 HYIKILTR*NEHNARTSTRPGTGRIRFPSKPDT 27
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 -----LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 310 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 441
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 310 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 441
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 155 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 295
D +L R G +G IF VR RF++ R D++ PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 694 FSDDRAKRSPTYATXLMSPYNARLESSSTGSSFPADSPKP 575
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 694 FSDDRAKRSPTYATXLMSPYNARLESSSTGSSFPADSPKP 575
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
protein C25H3.8 protein.
Length = 2148
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 93 T*RTNIDQTRHRPHPLPVQT 34
T +++ID T H PHP+ VQT
Sbjct: 904 TLKSSIDITNHLPHPIAVQT 923
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,315,761
Number of Sequences: 27780
Number of extensions: 392189
Number of successful extensions: 995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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