Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O16
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    31   1.1  
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   1.1  
03_04_0006 + 16257288-16259522                                         30   2.6  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.6  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   4.6  
04_01_0109 + 1120981-1121249,1121326-1121536,1121683-1121880           29   6.0  
03_01_0051 + 445035-445303,445380-445590,445737-445930,446151-44...    29   6.0  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 476  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 622
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -2

Query: 88  TNIDQTRH------RPHPLPVQTRHAPVLRANP 8
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 683 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 531
           A+RSP    Y T L +   ARL    T    PA SP    +AV S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 500 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 399
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 683 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 558
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


>04_01_0109 + 1120981-1121249,1121326-1121536,1121683-1121880
          Length = 225

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 693 AEKPLLSLFHYLLGWAEAVPRSIISAGAR 779
           A+  LLS  H  LGWA   P + + AG R
Sbjct: 82  AKSALLSWKHLALGWANVEPDTPVKAGTR 110


>03_01_0051 +
           445035-445303,445380-445590,445737-445930,446151-446228,
           447049-447141,448495-448525,448729-449058
          Length = 401

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 693 AEKPLLSLFHYLLGWAEAVPRSIISAGAR 779
           A+  LLS  H  LGWA   P + + AG R
Sbjct: 82  AKSALLSWKHLALGWANVEPDTPVKAGTR 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,175,580
Number of Sequences: 37544
Number of extensions: 569546
Number of successful extensions: 1976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1974
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)