Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O16
(833 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 63 2e-10
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 2e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5) 31 0.87
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4) 31 1.5
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97) 30 2.0
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 30 2.0
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29) 29 3.5
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 4.6
SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_11834| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_56420| Best HMM Match : CUB (HMM E-Value=0.45) 28 8.1
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = -1
Query: 674 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR 546
+PTY+TPLMS + RLESSSTGSSFPAD KPVPLAVVSLDSR
Sbjct: 88 TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSLDSR 130
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -3
Query: 804 HFERLERNTVRPPILSTGAPLPPNRVSNETMKVVVFQRR 688
H +R T+ P G+ LP +R+S +T++VVVF RR
Sbjct: 48 HGSVCKRETLNPEREPCGS-LPLHRISKKTIRVVVFHRR 85
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -3
Query: 414 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 310
++EHWAEITLRQH PSQCFVLI+QSDSP CQF
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +2
Query: 485 MPRHLISDAHEWINEIPTVPIYYLAKP 565
MPRHLISDAHEWINEIPTVPI +P
Sbjct: 1 MPRHLISDAHEWINEIPTVPIIEFLQP 27
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 402 SALNVNVKKFKQARVNGGSNYDSL 473
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3
Query: 405 ALNVNVKKFKQARVNGGSNYDSL 473
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 399 PSALNVNVKKFKQARVNGGSNYDS 470
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5)
Length = 398
Score = 31.5 bits (68), Expect = 0.87
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 120 KILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPIPP 4
+ILT ++ + + S RP T R+ ++ DTP P PP
Sbjct: 120 QILTNDDDSSIKRSYRPPTPPARYRARDDTPEQQPPPPP 158
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 305 LTVERRSYRIVPIAHETKPTRPYG*EDPRKA-GERGSGSSPKRKT 174
L+V R Y++VP++HE + R A +GSGSSP R T
Sbjct: 1038 LSVSGRCYKVVPLSHELCLVSKSLWNNRRSADNPKGSGSSPTRDT 1082
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 31.5 bits (68), Expect = 0.87
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 120 KILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPIPP 4
+ILT ++ + + S RP T R+ ++ DTP P PP
Sbjct: 1877 QILTNDDDSSIKRSYRPPTPPARYRARDDTPEQQPPPPP 1915
>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
Length = 242
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 88 TNIDQTRHRPHPLPVQTRHAP 26
T+ QT+HRPH P QT H P
Sbjct: 167 TDPTQTQHRPHTDPTQTPHGP 187
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -2
Query: 97 T*RTNID--QTRHRPHPLPVQTRHAP 26
T RT+ D QT+HRP+ P QT+H P
Sbjct: 151 TTRTHTDPTQTQHRPNTDPTQTQHRP 176
>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
Length = 540
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 31 RVGFGREADAAGAGSGRCSCVMFVLAS*YFNIMRPQ--KLYIFNMTLAKIVLRFGLDP 198
R G E +G+G +C MFV+A N+M Q + T ++ R G+DP
Sbjct: 154 RDGVHLEIKRTASGTGTVNCHMFVVADALMNLMNGQLESIQYLAHTPERVSARSGMDP 211
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 88 TNIDQTRHRPHPLPVQTRHAP 26
TN QT+H PH P QT H P
Sbjct: 111 TNPTQTQHGPHTNPTQTPHGP 131
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 88 TNIDQTRHRPHPLPVQTRHAP 26
T+ +TRH PH P +TRH P
Sbjct: 23 TDPTRTRHGPHTDPTRTRHGP 43
>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
Length = 1123
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/92 (27%), Positives = 37/92 (40%)
Frame = -3
Query: 294 TAVVQNRADRARNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKI 115
T++ + + +ETDT LR+G+ G R +Q + E Y+ L H
Sbjct: 528 TSIASDTEVISEDETDTLLRIGQLNSGDRIDYVLQERPLESLNE----YLFALSSHVCYC 583
Query: 114 LTR*NEHNARTSTRPGTGRIRFPSKPDTPRSS 19
L N H R S GR + K T R +
Sbjct: 584 LELTNAHAQRDSI-AAVGRAFYGHKQTTTRKN 614
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 329 ESDCLIKTKHCDGPRGC*RNVISAQCSE 412
E DC+ +KHCDG C C E
Sbjct: 73 EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100
>SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 677 RSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 558
R PT P + Y +S TG +F AD P+ VP+ VS
Sbjct: 117 RRPTDDPPPLPDYVMVRFTSYTGPAFIADDPQVVPIVPVS 156
>SB_11834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 825 TXFPPRHHFERLERNTVRPPILSTGAPLPPNRVSNETMKVVVFQRRSRETISHL 664
T R ERL T +++ AP + NE+ + +QRR + T+ HL
Sbjct: 19 TIIEEREKEERLYAKTWTDSLVTVSAPKTADNWVNESCEDRAYQRRRKITLPHL 72
>SB_56420| Best HMM Match : CUB (HMM E-Value=0.45)
Length = 1017
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 81 STRPGTGRIRFPSKPDTPRSSEPIPP 4
ST P T FP+ P T S+ P PP
Sbjct: 543 STAPQTTASAFPTPPQTTASASPTPP 568
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,817,058
Number of Sequences: 59808
Number of extensions: 618910
Number of successful extensions: 1777
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1774
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -