Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O16
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.1
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.1
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 4.1
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 5.4
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 5.4
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 5.4
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 5.4
Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.2
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 7.2
AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical... 28 7.2
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 28 9.5
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 28 9.5
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 9.5
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 314 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 445
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 314 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 445
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 159 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 299
D +L R G +G IF VR RF++ R D++ PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 698 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 579
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 698 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 579
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 114 LTR*NEHNARTSTRPGTGRIRFPSKPDT 31
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 114 LTR*NEHNARTSTRPGTGRIRFPSKPDT 31
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 114 LTR*NEHNARTSTRPGTGRIRFPSKPDT 31
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 114 LTR*NEHNARTSTRPGTGRIRFPSKPDT 31
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical
protein C40H1.7 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 786 RNTVRPPILSTGAPLPPNRVSNETMKVVVFQRR 688
RNTV P I +TG P + N+ + V++RR
Sbjct: 76 RNTVLPVIAATGTDNPQKCLDNQLPSMKVYKRR 108
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
protein C25H3.8 protein.
Length = 2148
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 97 T*RTNIDQTRHRPHPLPVQT 38
T +++ID T H PHP+ VQT
Sbjct: 904 TLKSSIDITNHLPHPIAVQT 923
>AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical
protein Y50D7A.8 protein.
Length = 569
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 96 HNARTSTRPGTGRIRFPSKPDTPRSSEPIPP 4
+N T P + + P +P T ++EP+PP
Sbjct: 426 NNLSTINEPSSSSLPPPQQPSTSSTTEPVPP 456
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 795 RLERNTVRPPILSTGAPLPPN 733
R+ R+ V PP+LS P PPN
Sbjct: 249 RISRSPVPPPVLSIPPPPPPN 269
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 795 RLERNTVRPPILSTGAPLPPN 733
R+ R+ V PP+LS P PPN
Sbjct: 249 RISRSPVPPPVLSIPPPPPPN 269
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -1
Query: 695 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 579
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,873,475
Number of Sequences: 27780
Number of extensions: 430326
Number of successful extensions: 1323
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -