Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O16
         (833 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.6  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    30   2.2  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    29   2.9  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    29   2.9  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.8  
At5g24350.1 68418.m02870 expressed protein weak similarity to ne...    29   5.0  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   5.0  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   5.0  
At2g45560.1 68415.m05665 cytochrome P450 family protein                29   5.0  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   6.6  
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    28   8.8  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 197 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 313
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 180 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 314
           T+ T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 762 LSTGAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 637
           LS+  P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 15  LSSENPTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 762 LSTGAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 637
           LS+  P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 15  LSSENPTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 662 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 552
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g24350.1 68418.m02870 expressed protein weak similarity to
            neuroblastoma-amplified protein [Homo sapiens] GI:4337460
          Length = 2376

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -3

Query: 783  NTVRPPILSTGAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCQTRVKLNRVF 604
            + V   +   G P   ++  +E + +V++       IS+ CY S  S  C    KL+R F
Sbjct: 2191 SVVEEQLKQEGIPELSSQSHHEVLLLVIYSGTLSTIISNACYGSVFSFLCYLIGKLSREF 2250

Query: 603  FPR*FSQA 580
                 +QA
Sbjct: 2251 QEERITQA 2258


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 464 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 354
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 464 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 354
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 43  GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 201
           GR+ +    G+GR  C    LA    ++M    LY F+  L K VL   LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 204 RVRIQSET*DDFRECHIKYIQFLRPH 127
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 132 ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPF 296
           ASK + I Y  RENR+ ++ G+     GL R +  V+ C +  + D      P F
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,042,377
Number of Sequences: 28952
Number of extensions: 414545
Number of successful extensions: 1244
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)