Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O15
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
 Frame = +3

Query: 423 GXXPPXGXXPPPPPXXXXXXS--PPPPXXGGGXPPPPPXP 536
           G  PP    P PP       S  PP P   G  P  P  P
Sbjct: 407 GQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 496  PXXGXXXPPPPPP 534
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 495  PXXGGGXPPPPP 530
            P  G   PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 309 PXKKXPPPPPXGGXG 265
           P K  PPPPP    G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 312 PPXKKXPPPPP 280
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 413 KXXPPPPPP 387
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 432 PPXGXXPPPPP 464
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.147    0.512 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,298
Number of Sequences: 438
Number of extensions: 10869
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)