Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O12
(865 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 321 2e-86
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 293 5e-78
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 246 6e-64
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 227 2e-58
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 210 3e-53
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 141 2e-32
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 94 4e-18
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 92 2e-17
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 90 6e-17
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 89 1e-16
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 86 9e-16
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 83 1e-14
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 83 1e-14
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 79 1e-13
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 75 3e-12
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 71 3e-11
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 70 7e-11
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 70 9e-11
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 70 9e-11
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 63 1e-08
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 63 1e-08
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 61 3e-08
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 7e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 59 2e-07
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.081
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.7
UniRef50_Q2IJD0 Cluster: 50S ribosomal protein L3; n=2; Anaeromy... 35 2.3
UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2; Clost... 35 3.1
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.0
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 34 5.3
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.3
UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3; ... 33 7.1
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 9.3
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 33 9.3
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 321 bits (788), Expect = 2e-86
Identities = 152/252 (60%), Positives = 183/252 (72%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKNW+
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+MEIQ+
Sbjct: 126 KKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQV 185
Query: 590 NGGTIEDKVKWAREHLEKPIPGRFCVXPR*ND*LHWCHQGPRIQRCHFSXGTPKXLPRKX 769
NGGT+ +K+ WARE LE+ +P + +G + T K LPRK
Sbjct: 186 NGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHT-KKLPRKT 244
Query: 770 HXGSLGKFACIG 805
H G L K ACIG
Sbjct: 245 HRG-LRKVACIG 255
Score = 77.8 bits (183), Expect = 3e-13
Identities = 39/70 (55%), Positives = 47/70 (67%)
Frame = +3
Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVV 833
V+ VF QDEMID IGVTKG+GYKGVTSR H + P + GL + +G WHP+
Sbjct: 207 VNQVFGQDEMIDVIGVTKGKGYKGVTSRW-HTKKLPRKTHRGL-RKVACIGAWHPARVAF 264
Query: 834 PVARAGQKGF 863
VARAGQKG+
Sbjct: 265 SVARAGQKGY 274
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 293 bits (718), Expect = 5e-78
Identities = 144/272 (52%), Positives = 179/272 (65%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+W+
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHIMEIQL
Sbjct: 126 KKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQL 185
Query: 590 NGGTIEDKVKWAREHLEKPIPGRFCVXPR*ND*LHWCHQGPRIQRCHFSXGTPKXLPRKX 769
NGGT+ +KV WA+ LEK +P + +G ++ T K LPRK
Sbjct: 186 NGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHT-KKLPRKT 244
Query: 770 HXGSLGKFACIGNLASFXGCCPCSSCWSKRFH 865
H G L K ACIG C + K +H
Sbjct: 245 HKG-LRKVACIGAWHPARVGCSIARAGQKGYH 275
Score = 67.3 bits (157), Expect = 5e-10
Identities = 35/70 (50%), Positives = 44/70 (62%)
Frame = +3
Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVV 833
V SVF Q E+ID I VTKG+G KGVTSR H + P + GL + +G WHP+
Sbjct: 207 VHSVFSQSEVIDVIAVTKGRGVKGVTSRW-HTKKLPRKTHKGL-RKVACIGAWHPARVGC 264
Query: 834 PVARAGQKGF 863
+ARAGQKG+
Sbjct: 265 SIARAGQKGY 274
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 246 bits (602), Expect = 6e-64
Identities = 107/163 (65%), Positives = 127/163 (77%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 538
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 66.5 bits (155), Expect = 8e-10
Identities = 34/67 (50%), Positives = 41/67 (61%)
Frame = +3
Query: 663 VFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVVPVA 842
V +MID IGVT+G G+KGVTSR H + P + GL + +G WHPS VA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRW-HTKKLPRKTHKGL-RKVACIGAWHPSRVAFTVA 219
Query: 843 RAGQKGF 863
RAGQKGF
Sbjct: 220 RAGQKGF 226
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 227 bits (556), Expect = 2e-58
Identities = 120/260 (46%), Positives = 162/260 (62%), Gaps = 8/260 (3%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKNW
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQS 176
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ---KKAHIME 580
+ GR + + K + ++RV+AHTQ++ L+ + KKAH+ E
Sbjct: 177 AQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSE 236
Query: 581 IQLNGGTIEDKVKWAREHLEKPIPGRFCVXPR*ND*LHWCHQGPRIQRCHFSXGTPK--- 751
IQ+NGGTI K++ A+ LEK + R + ++ C + + H G K
Sbjct: 237 IQINGGTIAQKIELAKSLLEKEV--RIDSVFQQSEACDVC----AVTKGHGFTGVVKRWG 290
Query: 752 --XLPRKXHXGSLGKFACIG 805
LPRK H G L K ACIG
Sbjct: 291 VACLPRKTHRG-LRKVACIG 309
Score = 56.0 bits (129), Expect = 1e-06
Identities = 30/70 (42%), Positives = 37/70 (52%)
Frame = +3
Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVV 833
+DSVF Q E D VTKG G+ GV R P + GL + +G WHPS +
Sbjct: 261 IDSVFQQSEACDVCAVTKGHGFTGVVKRWG-VACLPRKTHRGL-RKVACIGAWHPSRVMY 318
Query: 834 PVARAGQKGF 863
VARAGQ G+
Sbjct: 319 TVARAGQHGY 328
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 210 bits (513), Expect = 3e-53
Identities = 97/183 (53%), Positives = 127/183 (69%)
Frame = +2
Query: 47 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 226
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPE 64
Query: 227 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYX 406
SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKNW+
Sbjct: 65 SKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWHS 124
Query: 407 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 586
++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+MEIQ
Sbjct: 125 EKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLMEIQ 178
Query: 587 LNG 595
+ G
Sbjct: 179 VMG 181
Score = 55.6 bits (128), Expect = 2e-06
Identities = 31/64 (48%), Positives = 38/64 (59%)
Frame = +3
Query: 672 QDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVVPVARAG 851
QDE+ID I TKG GYKGVT R+ QR P R G + +G WHP+ VA+ G
Sbjct: 193 QDEIIDVIKETKGNGYKGVT-RVDIQRNCPERPIEGCPKL--CVGAWHPARVTFSVAQVG 249
Query: 852 QKGF 863
QKG+
Sbjct: 250 QKGY 253
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 141 bits (341), Expect = 2e-32
Identities = 82/187 (43%), Positives = 111/187 (59%)
Frame = +2
Query: 92 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 271
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 272 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 451
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 452 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 631
G ++ TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 632 HLEKPIP 652
LE+ +P
Sbjct: 156 KLEQQVP 162
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 94.3 bits (224), Expect = 4e-18
Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 412
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 413 XXXXXXXXXXWQDELGRK--SIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKAH-IM 577
+ + + D + ++ VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 578 EIQLNGGTIEDKVKWAREHL 637
E+ L GG K++WA E L
Sbjct: 186 EVGLVGGDTGAKLEWAHERL 205
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 91.9 bits (218), Expect = 2e-17
Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 2/203 (0%)
Frame = +2
Query: 47 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 226
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 227 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 400
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI---- 115
Query: 401 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 580
+ RK++E D + + VRV+ HT KL +KK I+E
Sbjct: 116 -------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILE 161
Query: 581 IQLNGGTIEDKVKWAREHLEKPI 649
I++ G IE+++ +A+E L K +
Sbjct: 162 IRIGGKDIEERLNYAKEILGKQL 184
Score = 48.0 bits (109), Expect = 3e-04
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +3
Query: 627 ENIWRNLSLVDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALG 806
E + + L++ D VF + E++D IGVTKG+G++G R + + G+ + ++G
Sbjct: 178 EILGKQLNITD-VFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIG 236
Query: 807 TWHPSXGVVPVARAGQKGF 863
W P + V GQ G+
Sbjct: 237 PWQPKMVMWSVPMPGQMGY 255
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 90.2 bits (214), Expect = 6e-17
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 355
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 89.0 bits (211), Expect = 1e-16
Identities = 52/111 (46%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRR 385
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
Score = 37.9 bits (84), Expect = 0.33
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 627 ENIWRNLSLVDSVFXQDEMIDCIGVTKGQGYKGVTSR 737
+++ NL V+ VF + +++D I VTKG+G++GV R
Sbjct: 184 KDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKR 220
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 86.2 bits (204), Expect = 9e-16
Identities = 65/195 (33%), Positives = 92/195 (47%), Gaps = 1/195 (0%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 418
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL---------- 114
Query: 419 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHT-QMKLLKQRQKKAHIMEIQLNG 595
DEL IE + I + +RVI HT +K +ME ++ G
Sbjct: 115 -SVPDEGGDTDEL----IEALDTEEI---ADIRVITHTVPGDTAGVPKKNPDVMETRVGG 166
Query: 596 GTIEDKVKWAREHLE 640
GT+ D++++A + +E
Sbjct: 167 GTLADRLEFAADLIE 181
Score = 39.9 bits (89), Expect = 0.081
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +3
Query: 663 VFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVVPVA 842
VF E D G+TKG+G +G R Q+ G + LG W+PS V
Sbjct: 191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVP 250
Query: 843 RAGQKGF 863
+ GQ G+
Sbjct: 251 QQGQTGY 257
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 82.6 bits (195), Expect = 1e-14
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 10/207 (4%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK----- 394
KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKM 122
Query: 395 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKA 568
+Y + E+ + + + + MI+ + VR I TQ ++K + KK
Sbjct: 123 TFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLK-KKP 180
Query: 569 HIMEIQLNGGTIEDKVKWAREHLEKPI 649
+ME + G ++E+K + +E L K +
Sbjct: 181 EVMEYAIGGTSVEEKFNYIKEKLGKEL 207
Score = 39.5 bits (88), Expect = 0.11
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +3
Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVV 833
V V + E++D I VTKG+G +G R + + + G + ++G WHP+ +
Sbjct: 209 VGEVLKEGELLDVIAVTKGKGTQGPVKRWG-IKLRAHKDSKGR-RKVGSIGPWHPARVMW 266
Query: 834 PVARAGQKGF 863
V AGQ GF
Sbjct: 267 TVPMAGQMGF 276
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 82.6 bits (195), Expect = 1e-14
Identities = 58/197 (29%), Positives = 91/197 (46%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 418
+EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVF-----TVPK 123
Query: 419 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 598
+EL + I ++ +RVI TQ K +KK +ME ++ G
Sbjct: 124 DGEAGDLDKIEELVDEGIVEE----------IRVIVATQPKKAGVPKKKPDVMEYRIGGK 173
Query: 599 TIEDKVKWAREHLEKPI 649
+ ++ ++A E L + I
Sbjct: 174 DVRERFEYAVEILSEEI 190
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 79.0 bits (186), Expect = 1e-13
Identities = 60/197 (30%), Positives = 92/197 (46%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 418
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 419 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 598
+D+ + K +++ S VRV+A TQ +L +KK ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 599 TIEDKVKWAREHLEKPI 649
E + A E L K +
Sbjct: 166 PPEKALSLALEKLGKDL 182
Score = 33.1 bits (72), Expect = 9.3
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 627 ENIWRNLSLVDSVFXQDEMIDCIGVTKGQGYKGVTSR 737
E + ++L++ D VF + + ID I VTKG+G++G R
Sbjct: 176 EKLGKDLTISD-VFKEGDYIDVIAVTKGKGFQGSVKR 211
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 74.5 bits (175), Expect = 3e-12
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 239 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 352
+EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 71.3 bits (167), Expect = 3e-11
Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 5/202 (2%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRRFYK-NWYX 406
KEI VT++E PP++ + + Y G ++T W+ + D RR + + +
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHSISSFL 127
Query: 407 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA-HIMEI 583
+ +L I+ + +++ + R++ TQ + + KKA ++EI
Sbjct: 128 KDDESKKKFDERFNTKL--DLIKSNLDRIVYF----RLLVSTQPRKIPSLGKKAPDLVEI 181
Query: 584 QLNGGTIEDKVKWAREHLEKPI 649
Q+ GG + ++ +A L K I
Sbjct: 182 QIGGGEKKSQLDYALNILGKEI 203
Score = 34.7 bits (76), Expect = 3.1
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSR 737
+ VF + ++ID +GVTKG+G+ GV R
Sbjct: 205 IRDVFKEGQLIDVVGVTKGKGFAGVIKR 232
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 70.1 bits (164), Expect = 7e-11
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 1/198 (0%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-YKNWYXXXX 415
K++V T++ TPP++ +G+ GY + GL A V+AE + + + KN
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISLKN------ 121
Query: 416 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 595
+ E + EK KK+ ++V I+ + L QKK +I E ++G
Sbjct: 122 ----------KQENALDNAEKSLKKIKEIFAIV-AISPSAAGL---EQKKPYIFEASVSG 167
Query: 596 GTIEDKVKWAREHLEKPI 649
G I + +E L K I
Sbjct: 168 GDIPKQFAHVKELLGKEI 185
Score = 37.1 bits (82), Expect = 0.57
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRL-AHQRXYPVRXTXGL*ESLPALGTWHPSXGV 830
+D +F +D +TKG+G++GV R ++ + R T + +LG P +
Sbjct: 187 IDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRKTV---REVGSLGPISPQSVM 243
Query: 831 VPVARAGQKGF 863
V RAGQ GF
Sbjct: 244 YTVPRAGQFGF 254
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 69.7 bits (163), Expect = 9e-11
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 232
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 233 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 352
EI VTI+E P M G+ Y ++P+G + + W
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 69.7 bits (163), Expect = 9e-11
Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 41/237 (17%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 175
+ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 176 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 352
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
Query: 353 ---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDELGRKSIEKD 481
E + E + + N + E G K +E +
Sbjct: 125 RSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFKFLENN 184
Query: 482 FKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHL 637
+K+ + +RVIA T L +KK I+EI++ GGT+ +++ +A + L
Sbjct: 185 WKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLL 241
Score = 40.7 bits (91), Expect = 0.046
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 627 ENIWRNLSLVDSVFXQDEMIDCIGVTKGQGYKGVTSR 737
E + N VD VF + + ID IGVTKG+G++GV R
Sbjct: 238 EKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKR 274
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 62.9 bits (146), Expect = 1e-08
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +2
Query: 56 HPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 235
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 236 NKKEIVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWAEHMSED 373
+ I VT+IE PP+ +G+ Y E G + + W +++ ++
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
Score = 34.3 bits (75), Expect = 4.0
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 678 EMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVVPVARAGQK 857
+ +D + VTKG+G+ G R + P R + LG WHP V +AGQ
Sbjct: 190 KFVDVLSVTKGKGFTGHVQRFG-VKLLP-RKNRKHRRMIGTLGPWHPDWVRNTVPQAGQM 247
Query: 858 GF 863
G+
Sbjct: 248 GY 249
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 62.9 bits (146), Expect = 1e-08
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 394
+ + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK 110
Score = 37.5 bits (83), Expect = 0.43
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRL-AHQRXYPVRXTXGL*ESLPALGTWHPSXGV 830
++ VF + + +D I VTKG+G++GV R H+R + + G+ + A+G+ P
Sbjct: 179 INDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQH--KSEKGV-RKVGAIGSRGPGRIF 235
Query: 831 VPVARAGQKGF 863
V GQ G+
Sbjct: 236 PTVPMPGQMGY 246
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 61.3 bits (142), Expect = 3e-08
Identities = 39/105 (37%), Positives = 50/105 (47%)
Frame = -1
Query: 652 RDRFLQMFSGPFHFVLDGTTVKLDFHNVXXXXXXXXXXXXSVGNDSYNTTVADHLLEIFF 473
R+ F ++F GP +FV DGTTV LDF V V DS N +V + F
Sbjct: 71 RNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSF 130
Query: 472 Y*FASKLILPFLTGFSESLLLAFVPVFVEATSTVFRHMLRPDSQQ 338
F + F F E LL F+PV VE++S F + PDS Q
Sbjct: 131 NLFGVSGV--FTRVFGEGFLLGFIPVLVESSSDFFTQVFSPDSGQ 173
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 60.1 bits (139), Expect = 7e-08
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F+HP GS+GF PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 349
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
Score = 58.0 bits (134), Expect = 3e-07
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +3
Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVV 833
++S+F ++++ID IG+TKG G KGV SR R P + GL + +G W PS
Sbjct: 189 INSIFHENDIIDAIGITKGHGTKGVVSRWGITR-LPRKTHRGL-RKVACIGPWTPSRVAW 246
Query: 834 PVARAGQKGF 863
++RAGQKG+
Sbjct: 247 TISRAGQKGY 256
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/108 (28%), Positives = 56/108 (51%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 373
K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
Score = 37.1 bits (82), Expect = 0.57
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 684 IDCIGVTKGQGYKGVTSRL-AHQRXYPVRXTXGL*ESLPALGTWHPSXGVVPVARAGQKG 860
+D +TKG+G++GV R+ A ++ + R T L +LG P + V RAGQ G
Sbjct: 195 VDVAAITKGKGWQGVIQRMGAKRKQHKSRKTV---RELGSLGPISPQNVMYTVPRAGQMG 251
Query: 861 F 863
F
Sbjct: 252 F 252
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.081
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 107 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 244
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 241 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 345
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q2IJD0 Cluster: 50S ribosomal protein L3; n=2;
Anaeromyxobacter|Rep: 50S ribosomal protein L3 -
Anaeromyxobacter dehalogenans (strain 2CP-C)
Length = 236
Score = 35.1 bits (77), Expect = 2.3
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSR 737
VD VF ++ ID GVTKG+G+ GV R
Sbjct: 105 VDKVFKANQRIDVAGVTKGRGFTGVMKR 132
>UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2;
Clostridiaceae|Rep: Purine catabolism PurC-like -
Clostridium oremlandii OhILAs
Length = 551
Score = 34.7 bits (76), Expect = 3.1
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 506 SVVRVIAHTQMKLLKQRQKKAH--IMEIQLNGGTIEDKVKWAREHLEKPI 649
SV + I + Q LL QR +K H +M + L GG+IED + RE+L P+
Sbjct: 126 SVFKEIFNKQTSLL-QRLEKVHEQLMNVVLEGGSIEDIGRVTRENLRNPL 174
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 4.0
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 92 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 265
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 266 IIETPPMVCVGVVG 307
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.9 bits (74), Expect = 5.3
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 419 PSSCICTSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSEESR 270
PS+ I T SD++ L P QS+ V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 5.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 443 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 598
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 310
Score = 33.5 bits (73), Expect = 7.1
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +1
Query: 10 FSLRLSSSMSHRKFSAPRSWVYGILSQKE 96
FSL L+ S S+R+F P+SWV+G+ + ++
Sbjct: 165 FSLGLNLSTSNRQFVPPKSWVFGMAAMRK 193
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 9.3
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 286 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 137
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 33.1 bits (72), Expect = 9.3
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +2
Query: 455 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 634
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 635 LEKPI 649
EKPI
Sbjct: 195 KEKPI 199
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 887,651,073
Number of Sequences: 1657284
Number of extensions: 18508477
Number of successful extensions: 43391
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 41608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43351
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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