Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O12
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   290   1e-79
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   290   2e-79
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   1.5  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.4  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    27   3.4  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.0  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  290 bits (712), Expect = 1e-79
 Identities = 141/252 (55%), Positives = 180/252 (71%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 590 NGGTIEDKVKWAREHLEKPIPGRFCVXPR*ND*LHWCHQGPRIQRCHFSXGTPKXLPRKX 769
           NGG++ DKV+WAREH EK +  +          +    +G   +      GT K LPRK 
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGT-KRLPRKT 242

Query: 770 HXGSLGKFACIG 805
           H G L K ACIG
Sbjct: 243 HRG-LRKVACIG 253



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 30/70 (42%), Positives = 42/70 (60%)
 Frame = +3

Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVV 833
           + S F Q+EMID IGVT+G+G +G T+R   +R  P +   GL   +  +G WHP+    
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL-PRKTHRGL-RKVACIGAWHPANVQW 262

Query: 834 PVARAGQKGF 863
            VARAG  G+
Sbjct: 263 TVARAGNAGY 272


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  290 bits (711), Expect = 2e-79
 Identities = 140/252 (55%), Positives = 180/252 (71%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 590 NGGTIEDKVKWAREHLEKPIPGRFCVXPR*ND*LHWCHQGPRIQRCHFSXGTPKXLPRKX 769
           NGG++ DKV+WAREH EK +  +          +    +G   +      GT K LPRK 
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGT-KRLPRKT 242

Query: 770 HXGSLGKFACIG 805
           H G L K ACIG
Sbjct: 243 HRG-LRKVACIG 253



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 30/70 (42%), Positives = 42/70 (60%)
 Frame = +3

Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVV 833
           + S F Q+EMID IGVT+G+G +G T+R   +R  P +   GL   +  +G WHP+    
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL-PRKTHRGL-RKVACIGAWHPANVQW 262

Query: 834 PVARAGQKGF 863
            VARAG  G+
Sbjct: 263 TVARAGNAGY 272


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +2

Query: 8   ILVCDCLPACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYK 184
           IL  +  P C      H  + S   +P     +  G  K FP D+P S P+  +   G  
Sbjct: 284 ILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGED 343

Query: 185 AGMTHVVREPDRPGSKI 235
              T  ++ P++   +I
Sbjct: 344 VNFTVALKVPEKSNKEI 360


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 211 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 44
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P   V  IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 38  RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 157
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 666 FXQDEMIDCIGVTKGQGYKGVTSR 737
           F   + +D  G+TKG+G+ GV  R
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKR 168


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 503 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 613
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 309 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 461
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,624,456
Number of Sequences: 5004
Number of extensions: 75408
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)