Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O12
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   275   3e-74
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   272   2e-73
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   1.2  
05_04_0324 - 20273797-20274261                                         29   4.8  
01_01_1129 - 8948612-8950117,8951354-8951503                           29   4.8  
01_05_0125 - 18382402-18382761,18382863-18383036                       28   8.4  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  275 bits (675), Expect = 3e-74
 Identities = 135/253 (53%), Positives = 174/253 (68%), Gaps = 1/253 (0%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 586
                      +  + G+K I+   +KM +Y S+VRVIAHTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185

Query: 587 LNGGTIEDKVKWAREHLEKPIPGRFCVXPR*ND*LHWCHQGPRIQRCHFSXGTPKXLPRK 766
           +NGGTI DKV +  +  EK IP            +    +G   +      G  + LPRK
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRK 244

Query: 767 XHXGSLGKFACIG 805
            H G L K ACIG
Sbjct: 245 THRG-LRKVACIG 256



 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 35/70 (50%), Positives = 45/70 (64%)
 Frame = +3

Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVV 833
           VD+VF +DEMID IGVTKG+GY+GV +R    R  P +   GL   +  +G WHP+    
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHRGL-RKVACIGAWHPARVSY 265

Query: 834 PVARAGQKGF 863
            VARAGQ G+
Sbjct: 266 TVARAGQNGY 275


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  272 bits (668), Expect = 2e-73
 Identities = 134/253 (52%), Positives = 173/253 (68%), Gaps = 1/253 (0%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 586
                      +  + G+K I+   +KM +Y SVVRVI HTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185

Query: 587 LNGGTIEDKVKWAREHLEKPIPGRFCVXPR*ND*LHWCHQGPRIQRCHFSXGTPKXLPRK 766
           +NGGTI DKV +  +  EK IP            +    +G   +      G  + LPRK
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRK 244

Query: 767 XHXGSLGKFACIG 805
            H G L K ACIG
Sbjct: 245 THRG-LRKVACIG 256



 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 35/70 (50%), Positives = 45/70 (64%)
 Frame = +3

Query: 654 VDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPSXGVV 833
           VD+VF +DEMID IGVTKG+GY+GV +R    R  P +   GL   +  +G WHP+    
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHRGL-RKVACIGAWHPARVSY 265

Query: 834 PVARAGQKGF 863
            VARAGQ G+
Sbjct: 266 TVARAGQNGY 275


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 469 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 585
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 128 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 301
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 302 VGYIETPHGLRAL 340
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


>01_01_1129 - 8948612-8950117,8951354-8951503
          Length = 551

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -1

Query: 850 PARATGTTPXEGCQVPNAGKLS*RPXVXLTG*XLWCAXREVTPLYPWPLVTP-MQSIISS 674
           P    GT+  E      +   S  P + +    +  A R   P +P+PLV P +   +SS
Sbjct: 364 PMMVPGTSMPESASQSESCSTSSAPWMNMNSPMMPVASRLSAPPFPYPLVPPALWGCLSS 423

Query: 673 WXNT 662
           W  T
Sbjct: 424 WPAT 427


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 383 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 279
           ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 47  ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,434,717
Number of Sequences: 37544
Number of extensions: 530519
Number of successful extensions: 1236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)